CuGenDBv2

Gene ID	MS008973
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP47 reaction center protein
Genome location	scaffold399:302152..302373
RNA-Seq Expression	MS008973
Synteny	MS008973
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009456087.1 photosystem II 47 kDa protein [Momordica charantia]

4.1e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

YP_009674417.1 photosystem II 47 kDa protein [Siraitia grosvenorii]

4.1e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

YP_009738227.1 photosystem II 47 kDa protein [Siraitia siamensis]

4.1e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

YP_009752861.1 photosystem II 47 kDa protein [Baijiania yunnanensis]

4.1e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

YP_009752946.1 photosystem II 47 kDa protein [Momordica sessilifolia]

4.1e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

TrEMBL top hits

e value

%identity

Alignment

A0A2I6C006 Photosystem II CP47 reaction center protein

2.0e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

A0A515BLL2 Photosystem II CP47 reaction center protein

2.0e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

A0A6C0U8T5 Photosystem II CP47 reaction center protein

2.0e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

A0A6H0ET89 Photosystem II CP47 reaction center protein

2.0e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

A0A6H0EVC5 Photosystem II CP47 reaction center protein

2.0e-33

95.95

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRRV
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

SwissProt top hits

e value

%identity

Alignment

A6MM62 Photosystem II CP47 reaction center protein

1.6e-35

95.89

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRR
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR

A7M989 Photosystem II CP47 reaction center protein

1.6e-35

95.89

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRR
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR

A8W3E7 Photosystem II CP47 reaction center protein

1.6e-35

95.89

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRR
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR

B1A961 Photosystem II CP47 reaction center protein

1.6e-35

95.89

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRR
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR

Q0G9T6 Photosystem II CP47 reaction center protein

1.6e-35

95.89

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Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTTRR
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

2.5e-36

94.52

Show/hide

Query:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR
        DRATLKS+GVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA IDPDLDAQVEF AFQKLGDPTT+R
Subjt:  DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRR

Sequences

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CDS sequence

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GATCGTGCTACTTTGAAATCCAATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTTGGACACATTTGGCA
TGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTAGGATTGACCCAGATTTGGATGCTCAAGTAGAATTTGAGGCATTCCAAAAACTTGGAGATCCAACTACAAGAAGAG
TG

mRNA sequence

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Protein sequence

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DRATLKSNGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFARIDPDLDAQVEFEAFQKLGDPTTRRV

MS008973 (gene) of Bitter gourd (TR) v1 genome