CuGenDBv2

Gene ID	MS008974
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP47 reaction center protein
Genome location	scaffold399:303449..303646
RNA-Seq Expression	MS008974
Synteny	MS008974
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ARS44056.1 PsbB, partial [Cordyline cannifolia]

6.0e-28

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALV GWAGSMALYELA+F PFDPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

PHU09026.1 Photosystem II CP47 reaction center protein [Capsicum chinense]

7.1e-29

93.94

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+FYP DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

QRN71830.1 photosystem II CP47 chlorophyll apoprotein [Phanera variegata var. variegata]

2.7e-28

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+F P+DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

YP_009050962.1 PsbB [Camellia reticulata]

7.8e-28

93.94

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIF P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

YP_009193100.1 photosystem II 47 kDa protein [Inga leiocalycina]

7.8e-28

93.94

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIF P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

TrEMBL top hits

e value

%identity

Alignment

A0A075TQ42 Photosystem II CP47 reaction center protein

3.8e-28

93.94

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIF P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

A0A1D0CBZ0 Photosystem II CP47 reaction center protein

3.8e-28

93.94

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIF P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

A0A288W7L0 PsbB (Fragment)

2.9e-28

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALV GWAGSMALYELA+F PFDPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

A0A2G3BRB8 Photosystem II CP47 reaction center protein

3.4e-29

93.94

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+FYP DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

A0A6H0E006 Photosystem II CP47 reaction center protein

3.8e-28

93.94

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIF P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

SwissProt top hits

e value

%identity

Alignment

A4QJE1 Photosystem II CP47 reaction center protein

1.3e-30

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+F P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

A4QJM5 Photosystem II CP47 reaction center protein

1.3e-30

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+F P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

A4QK44 Photosystem II CP47 reaction center protein

1.3e-30

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+F P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

A9LYC6 Photosystem II CP47 reaction center protein

1.3e-30

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+F P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

Q3V508 Photosystem II CP47 reaction center protein

1.3e-30

92.42

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELA+F P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

9.6e-08

36.36

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W   +  ++N  G+LL  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

ATCG00680.1 photosystem II reaction center protein B

2.1e-31

90.91

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Query:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG
        W RVHTVVLNDPGRLL+VHIMHTALVAGWAGSMALYELA+F P DPVLDPMWRQGMF+IPFMTRLG
Subjt:  WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

Sequences

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CDS sequence

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TGGTGTCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGA
ATTAGCAATTTTTTATCCCTTCGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCATTATACCCTTCATGACTCGTTTAGGA

mRNA sequence

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TGGTGTCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGA
ATTAGCAATTTTTTATCCCTTCGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCATTATACCCTTCATGACTCGTTTAGGA

Protein sequence

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WCRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAIFYPFDPVLDPMWRQGMFIIPFMTRLG

MS008974 (gene) of Bitter gourd (TR) v1 genome