CuGenDBv2

Gene ID	MS008975
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Genome location	scaffold399:305023..305289
RNA-Seq Expression	MS008975
Synteny	MS008975
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0009526 - plastid envelope (cellular component) GO:0009570 - chloroplast stroma (cellular component) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domains	IPR001907 - ATP-dependent Clp protease proteolytic subunit IPR018215 - ClpP, Ser active site IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA IPR029045 - ClpP/crotonase-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88683.1 clp protease proteolytic subunit [Lagenaria siceraria]

3.5e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

QJD26320.1 ClpP [Trichosanthes kirilowii]

3.5e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

YP_009236304.1 clp protease proteolytic subunit [Gynostemma pentaphyllum]

3.5e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

YP_009526327.1 ATP-dependent Clp protease proteolytic subunit [Hemsleya lijiangensis]

3.5e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

YP_010119759.1 clp protease proteolytic subunit [Hemsleya zhejiangensis]

3.5e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

TrEMBL top hits

e value

%identity

Alignment

A0A120L1B9 ATP-dependent Clp protease proteolytic subunit

1.7e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

A0A410HFB2 ATP-dependent Clp protease proteolytic subunit

1.7e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

A0A6H0ERC6 ATP-dependent Clp protease proteolytic subunit

1.7e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

A0A6M3RTL1 ATP-dependent Clp protease proteolytic subunit

1.7e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

A0A6M3RTY7 ATP-dependent Clp protease proteolytic subunit

1.7e-39

94.38

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

SwissProt top hits

e value

%identity

Alignment

P12210 ATP-dependent Clp protease proteolytic subunit

5.1e-41

92.13

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIED+TKDLYLFINS GGWVIPGVAIYDTMQFVRPDV TICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

Q0G9T7 ATP-dependent Clp protease proteolytic subunit

5.1e-41

92.13

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIE+DTKDLYLFINS GGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFIL GGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

Q33C07 ATP-dependent Clp protease proteolytic subunit

5.1e-41

92.13

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIED+TKDLYLFINS GGWVIPGVAIYDTMQFVRPDV TICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

Q3C1K4 ATP-dependent Clp protease proteolytic subunit

5.1e-41

92.13

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIED+TKDLYLFINS GGWVIPGVAIYDTMQFVRPDV TICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

Q9M3K5 ATP-dependent Clp protease proteolytic subunit

1.7e-41

93.26

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVDSEISNQLIG MVYLSIEDDTKDLYLFINS GGWVIPGVAIYDTMQFVRPDV TICMGLAASMGSFILVGGEITKRLAFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

Arabidopsis top hits

e value

%identity

Alignment

AT1G02560.1 nuclear encoded CLP protease 5

7.3e-19

46.07

Show/hide

Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        +I   G  VD +++N ++  ++YL   D TKD+ +++NS GG V  G+AI+DTM+ +RPDV T+C+GLAASMG+F+L  G   KR + P
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

AT1G12410.1 CLP protease proteolytic subunit 2

1.8e-17

41.57

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ F+GQ +D E SNQ++  M+YL   DD++ +Y+++N  GG + P +AIYDTM+ ++  V T C+GLA ++  F+L  GE   R A P
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

AT1G66670.1 CLP protease proteolytic subunit 3

3.1e-17

44.94

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        +I FLG +VD   ++ +I  ++ L  ED  +D+ LFINS GG +  G+ IYD M+  + DV T+C+GLAASMG+F+L  G   KR   P
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

AT5G45390.1 CLP protease P4

8.4e-15

43.82

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Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        +I FLG  +D  +++ ++  ++ L  +D  KD+ LFINS GG +   +AIYD +Q VR DV TI +G+AAS  S IL  G   KR A P
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

ATCG00670.1 plastid-encoded CLP P

9.2e-38

83.15

Show/hide

Query:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP
        ++ FLGQEVD+EISNQLI  M+YLSIE DTKDLYLFINS GGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SFILVGG ITKR+AFP
Subjt:  KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

Sequences

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CDS sequence

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AAGATTACTTTTTTAGGCCAAGAGGTTGATAGCGAGATCTCGAATCAACTTATTGGTTTTATGGTATATCTCAGTATAGAGGATGATACCAAAGATCTGTATTTATTTAT
AAACTCTCTCGGTGGATGGGTAATACCCGGAGTAGCTATTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAATATGCATGGGATTAGCCGCTTCAATGGGAT
CTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCT

mRNA sequence

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Protein sequence

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KITFLGQEVDSEISNQLIGFMVYLSIEDDTKDLYLFINSLGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFP

MS008975 (gene) of Bitter gourd (TR) v1 genome