CuGenDBv2

Gene ID	MS008976
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Genome location	scaffold399:305917..306134
RNA-Seq Expression	MS008976
Synteny	MS008976
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0009526 - plastid envelope (cellular component) GO:0009570 - chloroplast stroma (cellular component) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domains	IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA IPR029045 - ClpP/crotonase-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QJD26320.1 ClpP [Trichosanthes kirilowii]

2.3e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

YP_009236304.1 clp protease proteolytic subunit [Gynostemma pentaphyllum]

2.3e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

YP_009439916.1 ATP-dependent Clp protease proteolytic subunit [Gynostemma caulopterum]

2.3e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

YP_009456086.1 ATP-dependent Clp protease proteolytic subunit [Momordica charantia]

2.3e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

YP_009870732.1 clp protease proteolytic subunit [Medinilla magnifica]

2.3e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

TrEMBL top hits

e value

%identity

Alignment

A0A120L1B9 ATP-dependent Clp protease proteolytic subunit

1.1e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

A0A410HFB2 ATP-dependent Clp protease proteolytic subunit

1.1e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

A0A4P9HQ12 ATP-dependent Clp protease proteolytic subunit

1.1e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

A0A6H0ERC6 ATP-dependent Clp protease proteolytic subunit

1.1e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

A0A6M3RTL1 ATP-dependent Clp protease proteolytic subunit

1.1e-28

97.26

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVAVE
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

SwissProt top hits

e value

%identity

Alignment

A4QJE0 ATP-dependent Clp protease proteolytic subunit

1.1e-30

94.52

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVS DME DVFMSATEAQAHGIVDLVAV+
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

A4QJM4 ATP-dependent Clp protease proteolytic subunit

1.1e-30

94.52

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVS DME DVFMSATEAQAHGIVDLVAV+
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

A4QKD0 ATP-dependent Clp protease proteolytic subunit

1.1e-30

94.52

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVS DME DVFMSATEAQAHGIVDLVAV+
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

A4QKL7 ATP-dependent Clp protease proteolytic subunit

1.1e-30

94.52

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVS DME DVFMSATEAQAHGIVDLVAV+
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

Q49KX3 ATP-dependent Clp protease proteolytic subunit

3.9e-31

95.89

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS DME DVFMSATEAQAHGIVDLVA+E
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

Arabidopsis top hits

e value

%identity

Alignment

AT5G23140.1 nuclear-encoded CLP protease P7

4.0e-07

38.36

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVV-SDMEMDVFMSATEAQAHGIVDLVAVE
        MIHQP S  Y  Q  +  +  ++++++ + +  +YV+ TG+PL VV ++M+ D FM+  EA+A GI+D V  E
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVV-SDMEMDVFMSATEAQAHGIVDLVAVE

ATCG00670.1 plastid-encoded CLP P

1.0e-31

93.15

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Query:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE
        MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WV+S DME DVFMSATEAQAHGIVDLVAV+
Subjt:  MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVS-DMEMDVFMSATEAQAHGIVDLVAVE

Sequences

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CDS sequence

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ATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACAAACAGGAGAATTTATCCTGGAAGCGGAAGAACTACTAAAGCTGCGCGAAACCATCACAAGGGTTTATGTACA
AAGAACAGGCAAACCCTTATGGGTTGTATCCGACATGGAAATGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCCGTTGAA

mRNA sequence

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Protein sequence

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MIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSDMEMDVFMSATEAQAHGIVDLVAVE

MS008976 (gene) of Bitter gourd (TR) v1 genome