; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008977 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008977
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationscaffold399:306689..306964
RNA-Seq ExpressionMS008977
SyntenyMS008977
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]2.5e-3286.81Show/hide
Query:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +ENVT+L  VTLRDG EEG RFSNEEKDPMTSK LN+ESY+VKISC+VL SGSKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]2.4e-3085.71Show/hide
Query:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +ENVTEL  VTLRDG EEGRRFSNEEKDP+TSK LNEE Y+VKISCT   S SKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]2.6e-3793.48Show/hide
Query:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        MNENVTEL PVTLRDG EEGRRFSNEEKDPMTSK LNEE Y+VKISCTVLSSGSKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]3.0e-3388.04Show/hide
Query:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        MNENVT+L PVTLRDG EEGRRFSNEEKDPMTSK LNEE Y+VKIS TVLSSGSKGDLSVNFSTITPK  N ALRKVARVRLTSGFEI AYI
Subjt:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.2e-3490.22Show/hide
Query:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        MNENVTEL  VTLRDG EEGRRFSNEEKDPMTSK LNEE Y+VKIS TVLSSGSKGDLS+NFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

TrEMBL top hitse value%identityAlignment
A0A0A0LR16 30S ribosomal protein S12-B2.0e-2793.24Show/hide
Query:  EEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAY
        EEGRRFSNEEKDPMTSK LNEE Y+VKIS TVLSSGSKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAY
Subjt:  EEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAY

A0A3S3NSS0 30S ribosomal protein S12, chloroplastic1.1e-3085.71Show/hide
Query:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +ENVTEL  VTLRDG EEGRRFSNEEKDP+TSK LNEE Y+VKISCT   S SKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

A0A443Q5G0 30S ribosomal protein S12, chloroplastic1.1e-3085.71Show/hide
Query:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +ENVTEL  VTLRDG EEGRRFSNEEKDP+TSK LNEE Y+VKISCT   S SKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

A0A6A5N1Q8 Uncharacterized protein1.2e-3286.81Show/hide
Query:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +ENVT+L  VTLRDG EEG RFSNEEKDPMTSK LN+ESY+VKISC+VL SGSKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  NENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

A0A6J1F0L1 uncharacterized protein LOC1114383941.3e-3793.48Show/hide
Query:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        MNENVTEL PVTLRDG EEGRRFSNEEKDPMTSK LNEE Y+VKISCTVLSSGSKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic1.7e-1589.36Show/hide
Query:  SCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +CT + SGSKGDLSVNFSTITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  SCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

A4QJV5 30S ribosomal protein S12-A, chloroplastic1.3e-0796.55Show/hide
Query:  TITPKKPNFALRKVARVRLTSGFEITAYI
        TITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  TITPKKPNFALRKVARVRLTSGFEITAYI

A4QJX7 30S ribosomal protein S12-B, chloroplastic1.5e-0878.95Show/hide
Query:  KGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +G  +  +STITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  KGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

A6TWI7 30S ribosomal protein S127.7e-0847.3Show/hide
Query:  EGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        +GR+   E+    T+ AL +    +K   T LS+  K  +  +  TITPKKPN ALRKVARVRLT+G E++AYI
Subjt:  EGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

A8MLD5 30S ribosomal protein S127.7e-0846.97Show/hide
Query:  EKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI
        E+   T+ AL +    ++   T +S+  K  +  +  T+TPKKPN ALRKVARVRLT+G E+TAYI
Subjt:  EKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI

Arabidopsis top hitse value%identityAlignment
ATCG00065.1 ribosomal protein S12A9.3e-0996.55Show/hide
Query:  TITPKKPNFALRKVARVRLTSGFEITAYI
        TITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  TITPKKPNFALRKVARVRLTSGFEITAYI

ATCG00905.1 ribosomal protein S12C9.3e-0996.55Show/hide
Query:  TITPKKPNFALRKVARVRLTSGFEITAYI
        TITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  TITPKKPNFALRKVARVRLTSGFEITAYI

ATCG01230.1 ribosomal protein S12B9.3e-0996.55Show/hide
Query:  TITPKKPNFALRKVARVRLTSGFEITAYI
        TITPKKPN ALRKVARVRLTSGFEITAYI
Subjt:  TITPKKPNFALRKVARVRLTSGFEITAYI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGACCCGGTCACTCTTCGGGACGGAAGGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGCATTGAA
CGAGGAGTCGTATAAGGTGAAAATCTCATGTACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTTTGCCT
TACGTAAAGTTGCTAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGACCCGGTCACTCTTCGGGACGGAAGGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGCATTGAA
CGAGGAGTCGTATAAGGTGAAAATCTCATGTACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTTTGCCT
TACGTAAAGTTGCTAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATA
Protein sequenceShow/hide protein sequence
MNENVTELDPVTLRDGREEGRRFSNEEKDPMTSKALNEESYKVKISCTVLSSGSKGDLSVNFSTITPKKPNFALRKVARVRLTSGFEITAYI