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MS008978 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008978
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationscaffold399:307125..307470
RNA-Seq ExpressionMS008978
SyntenyMS008978
Gene Ontology termsGO:0005840 - ribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4109387.1 hypothetical protein ERO13_1Z050202v2, partial [Gossypium hirsutum]9.7e-2681.48Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKAR P SFRKWI IRRVHN MDKLTLT QF IQF I LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

PPR83387.1 hypothetical protein GOBAR_AA37329 [Gossypium barbadense]7.9e-2883.95Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QFWIQF I LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

TYG79516.1 hypothetical protein ES288_D02G144500v1, partial [Gossypium darwinii]3.9e-2783.95Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QF IQFRI LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

TYI03364.1 hypothetical protein ES332_A11G333500v1 [Gossypium tomentosum]3.3e-2682.72Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QF IQF I LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

TYI10176.1 hypothetical protein ES332_A09G124500v1, partial [Gossypium tomentosum]4.4e-2682.72Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QF IQF I L GI KEFECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

TrEMBL top hitse value%identityAlignment
A0A0D2S9P0 Uncharacterized protein4.7e-2681.48Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHI IPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN M+KLTLT QF IQFRI LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

A0A2P5VX61 Uncharacterized protein3.8e-2883.95Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QFWIQF I LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

A0A5D2DGW6 Uncharacterized protein (Fragment)1.9e-2783.95Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QF IQFRI LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

A0A5D2NJX8 Uncharacterized protein1.6e-2682.72Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QF IQF I LGGI KE ECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

A0A5D2P344 Uncharacterized protein (Fragment)2.1e-2682.72Show/hide
Query:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR
        RN+SDHIDIPSTQ+RSSKGSRR TKARKP SFRKWI IRRVHN MDKLTLT QF IQF I L GI KEFECNNIDSYR +R
Subjt:  RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRI-LGGIGKEFECNNIDSYRYRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGCAATCAATCGGATCATATAGATATCCCTTCAACACAATATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCAAGAAAGCCAGAATCTTTCAGAAAATGGATTCA
TATTCGAAGAGTGCATAACCACATGGATAAGCTCACACTAACCCTTCAATTTTGGATCCAATTCAGAATTTTGGGAGGTATCGGGAAGGAATTTGAATGTAATAATATCG
ATTCATACAGATACAGAAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAAAGGAAAAAAACGAAGATTTCACATAGTATTTTTGATC
GAAAAATCAATC
mRNA sequenceShow/hide mRNA sequence
CGCAATCAATCGGATCATATAGATATCCCTTCAACACAATATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCAAGAAAGCCAGAATCTTTCAGAAAATGGATTCA
TATTCGAAGAGTGCATAACCACATGGATAAGCTCACACTAACCCTTCAATTTTGGATCCAATTCAGAATTTTGGGAGGTATCGGGAAGGAATTTGAATGTAATAATATCG
ATTCATACAGATACAGAAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAAAGGAAAAAAACGAAGATTTCACATAGTATTTTTGATC
GAAAAATCAATC
Protein sequenceShow/hide protein sequence
RNQSDHIDIPSTQYRSSKGSRRPTKARKPESFRKWIHIRRVHNHMDKLTLTLQFWIQFRILGGIGKEFECNNIDSYRYRRKGSLLIQTLYPRDRDREKGKKRRFHIVFLI
EKSI