CuGenDBv2

Gene ID	MS008999
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	binding partner of ACD11 1-like isoform X1
Genome location	scaffold1036:58543..59882
RNA-Seq Expression	MS008999
Synteny	MS008999
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142266.1 binding partner of ACD11 1 [Cucumis sativus]

1.4e-120

91.54

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQ+AYVTY+DSQGADTAILLTGAKIGDLSVTITLVENYHLPPE +SSI+DKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVVSTMLAKGFILGKDA+NKAK  DERL LTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV EKTK+ALAVAEQKA+SAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGA+WFSNAVTAV KAAEEVTQMTK KVEKAEEEKKE+IYRERTGII++FAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

XP_008452423.1 PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo]

2.4e-120

91.15

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQ+AYVTY+DSQGADTAILLTGAKIGDLSVTITLVENYHLPPE +SSI+DKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVVSTMLAKGFILGKDA+NKAK  DERL  TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTK+ALAVAEQKA+SAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGA+WFSNAVTAV KAAEEVTQMTK KVEKAEEEKKE+IYRERTGII++FAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

XP_022146867.1 binding partner of ACD11 1-like isoform X1 [Momordica charantia]

2.3e-131

99.62

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPE LSSIMDKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

XP_022146868.1 binding partner of ACD11 1-like isoform X2 [Momordica charantia]

2.3e-131

99.62

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPE LSSIMDKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

XP_038891484.1 binding partner of ACD11 1 [Benincasa hispida]

6.3e-121

91.54

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRETENTQ+AYVTY+DSQGADTAILLTGAKIGDLSVTITLVENYHLPPE +SSI+DK+QTV GIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVVSTMLAKGFILGKDA+NKAK  DERL LTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTK+ALAVAEQKA+SAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGA+WFSNAVTAV KAAEEVTQMTK KVEKAEEEKKE+IYRERTGIIN+FAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR7 RRM domain-containing protein

6.8e-121

91.54

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQ+AYVTY+DSQGADTAILLTGAKIGDLSVTITLVENYHLPPE +SSI+DKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVVSTMLAKGFILGKDA+NKAK  DERL LTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV EKTK+ALAVAEQKA+SAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGA+WFSNAVTAV KAAEEVTQMTK KVEKAEEEKKE+IYRERTGII++FAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

A0A1S3BT66 binding partner of ACD11 1-like isoform X2

1.2e-120

91.15

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQ+AYVTY+DSQGADTAILLTGAKIGDLSVTITLVENYHLPPE +SSI+DKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVVSTMLAKGFILGKDA+NKAK  DERL  TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTK+ALAVAEQKA+SAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGA+WFSNAVTAV KAAEEVTQMTK KVEKAEEEKKE+IYRERTGII++FAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

A0A5A7UTK1 Binding partner of ACD11 1-like isoform X1

1.2e-120

91.15

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQ+AYVTY+DSQGADTAILLTGAKIGDLSVTITLVENYHLPPE +SSI+DKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVVSTMLAKGFILGKDA+NKAK  DERL  TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTK+ALAVAEQKA+SAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGA+WFSNAVTAV KAAEEVTQMTK KVEKAEEEKKE+IYRERTGII++FAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

A0A6J1CZP8 binding partner of ACD11 1-like isoform X2

1.1e-131

99.62

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPE LSSIMDKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

A0A6J1D0S5 binding partner of ACD11 1-like isoform X1

1.1e-131

99.62

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPE LSSIMDKRQTVTGIAPN
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

SwissProt top hits

e value

%identity

Alignment

P87216 Protein vip1

1.1e-06

26.92

Show/hide

Query:  VKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPNRAE
        V V+NIS + +E+ I +FFSF G++  +  ++  E TQ A + +E      TA+LL  A +G   + IT  +         ++    +    G    R E
Subjt:  VKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPNRAE

Query:  D-----VVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVN------EKVREMDEMFQVSEK---TKTALAVAEQKA
        D     ++S +L++G+ L    + K+  LD+   ++S          +  GI E   +G   VN      EK  E+D  F +S+K   T + ++    KA
Subjt:  D-----VVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVN------EKVREMDEMFQVSEK---TKTALAVAEQKA

Query:  --SSAGTA
          ++AGT+
Subjt:  --SSAGTA

Q9LFD5 Binding partner of ACD11 1

1.4e-54

52.16

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        +R+VKV N+S   +E DI+EFFSFSGE+  +++Q    N   AYVT++++QGA+TA+LL+GA I D SV I L  NY  P    +   + + +       
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVVS+MLAKGFILGKDA+ KAK  DE+   TS A+A VAS+D+K+G+++K+TAGT++VNEK++ +D+ FQV+E+TK+  A AEQ  SSAG+A+M N 
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVE
        YVLTG SW + A   VA+AA EV Q TK KVE
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein

8.9e-65

56.2

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +Q+AYVT++DSQGA+TA+LLTGA I DL V+IT   NY LPPE L+  +D   +  G +  
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAK  D+R +L SNASAT+AS+D KMG++EK++ GT VVNEK+R++DE +QV E TK+ALA AE+ A SA TALM+N 
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENI
        YV +GASWFSNA  AV KA +E       KVE   E +KE I
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENI

AT1G67950.2 RNA-binding (RRM/RBD/RNP motifs) family protein

8.9e-65

56.2

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +Q+AYVT++DSQGA+TA+LLTGA I DL V+IT   NY LPPE L+  +D   +  G +  
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAK  D+R +L SNASAT+AS+D KMG++EK++ GT VVNEK+R++DE +QV E TK+ALA AE+ A SA TALM+N 
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENI
        YV +GASWFSNA  AV KA +E       KVE   E +KE I
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENI

AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein

7.5e-64

55.79

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +Q+AYVT++DSQGA+TA+LLTGA I DL V+IT   NY LPPE L ++  +  +  G +  
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAK  D+R +L SNASAT+AS+D KMG++EK++ GT VVNEK+R++DE +QV E TK+ALA AE+ A SA TALM+N 
Subjt:  RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNY

Query:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENI
        YV +GASWFSNA  AV KA +E       KVE   E +KE I
Subjt:  YVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENI

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.1e-70

56.82

Show/hide

Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        M TVKVSN+S   ++RD++EFFSFSG+ILY+E Q ETE T+LAYVT++D QGA+TA+LL+GA I D SV +++  +Y L PE L+S+  K    +  A +
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  ----RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTAL
            +AEDVVS+MLAKGFILGKDAI KAK +DE+  LTS ASA VAS D+K+G T+KI  GT VV EKVRE+D+ +QVSEKTK+A+A AEQ  S+AG+A+
Subjt:  ----RAEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTAL

Query:  MSNYYVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        M N YVLTGA+W + A   VAKAAEEV Q  K KV  AEEE K         ++++FA +HL E
Subjt:  MSNYYVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.5e-69

53.73

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Query:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN
        M TVKVSN+S + +ERD++EFFSFSG+I Y+E Q E + ++LAYVT++D QGA+TA+LLTG+ I D SVT+T+  +Y LPP+ L+SI   +++    +P 
Subjt:  MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPN

Query:  R--------AEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSA
        R        AEDVVS M++KGF+LGKDAI KAK LDE+  LTS ASA V S D+++G TEKI  GT VV+EKV+E+D+ FQV+EKTK+A+A AEQ  S+A
Subjt:  R--------AEDVVSTMLAKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSA

Query:  GTALMSNYYVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE
        G+A+M N YVLTGA+W + A   V+KAAEEV Q  K KV  AEEE++     E+  ++++ A +HL E
Subjt:  GTALMSNYYVLTGASWFSNAVTAVAKAAEEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

Sequences

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CDS sequence

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ATGAGAACTGTGAAGGTTAGCAATATCTCAAAAGATACTTCCGAGAGAGATATCGAAGAATTCTTCTCATTTTCTGGTGAAATCCTTTATGTTGAAATGCAGAGAGAAAC
TGAAAATACTCAGCTTGCTTATGTTACTTATGAGGATTCCCAAGGGGCAGATACTGCAATACTTTTGACAGGAGCAAAAATTGGTGATCTCTCTGTAACAATTACTCTGG
TTGAGAATTACCATCTTCCACCTGAAGTTCTATCATCAATCATGGATAAAAGGCAAACTGTTACCGGGATTGCCCCGAACCGGGCTGAAGATGTGGTAAGTACTATGCTT
GCCAAGGGCTTCATCTTGGGGAAGGATGCTATCAATAAGGCAAAAGATCTCGATGAACGACTCCACCTAACATCGAATGCTTCTGCGACTGTTGCTTCCATCGACCGCAA
GATGGGCATAACCGAGAAAATAACTGCAGGAACAGCAGTGGTAAACGAAAAGGTCAGGGAGATGGACGAAATGTTCCAGGTTTCCGAGAAGACGAAAACTGCCCTCGCAG
TCGCCGAGCAGAAGGCAAGCAGTGCAGGAACCGCACTAATGAGCAACTATTATGTGCTAACTGGAGCATCATGGTTTTCAAATGCTGTAACTGCAGTCGCAAAAGCTGCT
GAAGAAGTGACCCAGATGACCAAGGCAAAAGTCGAGAAAGCGGAGGAGGAGAAAAAGGAGAATATATACCGCGAAAGAACCGGGATCATTAACGACTTTGCCGAGCTCCA
TCTCGACGAG

mRNA sequence

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Protein sequence

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MRTVKVSNISKDTSERDIEEFFSFSGEILYVEMQRETENTQLAYVTYEDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEVLSSIMDKRQTVTGIAPNRAEDVVSTML
AKGFILGKDAINKAKDLDERLHLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKTALAVAEQKASSAGTALMSNYYVLTGASWFSNAVTAVAKAA
EEVTQMTKAKVEKAEEEKKENIYRERTGIINDFAELHLDE

MS008999 (gene) of Bitter gourd (TR) v1 genome