; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009036 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009036
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D2
Genome locationscaffold385:381590..382106
RNA-Seq ExpressionMS009036
SyntenyMS009036
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027248 - Small nuclear ribonucleoprotein Sm D2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0874151.1 hypothetical protein [Gossypium schwendimanii]2.2e-4898.04Show/hide
Query:  LQATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRN
        LQ TTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRN
Subjt:  LQATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRN

Query:  PK
        PK
Subjt:  PK

RDX79132.1 putative small nuclear ribonucleoprotein Sm D2, partial [Mucuna pruriens]3.7e-4898.02Show/hide
Query:  QATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        Q T KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
Subjt:  QATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Query:  K
        K
Subjt:  K

XP_022146455.1 small nuclear ribonucleoprotein Sm D2-like [Momordica charantia]1.3e-48100Show/hide
Query:  ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

XP_027340559.1 small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius]3.7e-48100Show/hide
Query:  TTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        TTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  TTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

XP_042477120.1 small nuclear ribonucleoprotein Sm D2 isoform X2 [Macadamia integrifolia]8.2e-4899Show/hide
Query:  ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        AT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

TrEMBL top hitse value%identityAlignment
A0A1S3BTT5 Small nuclear ribonucleoprotein Sm D25.2e-4898.99Show/hide
Query:  TTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        T+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  TTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A371FLL8 Small nuclear ribonucleoprotein Sm D2 (Fragment)1.8e-4898.02Show/hide
Query:  QATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        Q T KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
Subjt:  QATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Query:  K
        K
Subjt:  K

A0A6A4QKF7 Small nuclear ribonucleoprotein Sm D25.2e-48100Show/hide
Query:  TKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        TKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  TKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A6J1CZE7 Small nuclear ribonucleoprotein Sm D26.1e-49100Show/hide
Query:  ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  ATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A7J9MT30 Small nuclear ribonucleoprotein Sm D21.0e-4898.04Show/hide
Query:  LQATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRN
        LQ TTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRN
Subjt:  LQATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRN

Query:  PK
        PK
Subjt:  PK

SwissProt top hitse value%identityAlignment
P62316 Small nuclear ribonucleoprotein Sm D25.2e-4589.58Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

P62317 Small nuclear ribonucleoprotein Sm D25.2e-4589.58Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q18786 Probable small nuclear ribonucleoprotein Sm D25.9e-4185.11Show/hide
Query:  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Subjt:  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D25.2e-4589.58Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D21.5e-4488.54Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        + EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Arabidopsis top hitse value%identityAlignment
AT2G47640.1 Small nuclear ribonucleoprotein family protein6.1e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein6.1e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein6.1e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein6.1e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT3G62840.1 Small nuclear ribonucleoprotein family protein6.1e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCATCTCTGCAGGCTACTACTAAGAATGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTTAAAAACAACACTCAGGTCCTCATAAATTGTCG
CAACAACAAAAAGCTATTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACCGAGGTACCAAAAACTGGGAAGGGCA
AGAAAAAAGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCCGTCATTATCGTTCTTAGGAATCCCAAG
mRNA sequenceShow/hide mRNA sequence
GCATCTCTGCAGGCTACTACTAAGAATGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTTAAAAACAACACTCAGGTCCTCATAAATTGTCG
CAACAACAAAAAGCTATTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACCGAGGTACCAAAAACTGGGAAGGGCA
AGAAAAAAGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCCGTCATTATCGTTCTTAGGAATCCCAAG
Protein sequenceShow/hide protein sequence
ASLQATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK