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MS009040 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009040
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationscaffold385:413273..413438
RNA-Seq ExpressionMS009040
SyntenyMS009040
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0031047 - gene silencing by RNA (biological process)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ALM88235.1 RNA-dependent RNA polymerase 1c [Cucumis sativus]2.6e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S P + +R+R+YDRV+S LK   VIG+KKFEFLAFS  QL ++S WMF SREG
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

KAA0046405.1 putative RNA-dependent RNA polymerase 1 [Cucumis melo var. makuwa]9.8e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S P +  R+R+YDRV+S LK   VIGDKKFEFLAFS  QL ++S WMF SR+G
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

XP_022146462.1 probable RNA-dependent RNA polymerase 1 [Momordica charantia]5.8e-0870.21Show/hide
Query:  ERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        ER+R+YDR+LS L+   VIGDKKFEFLAFS  QL ++SVWMF SREG
Subjt:  ERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

XP_031740912.1 probable RNA-dependent RNA polymerase 1 [Cucumis sativus]2.6e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S P + +R+R+YDRV+S LK   VIG+KKFEFLAFS  QL ++S WMF SREG
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

XP_038875555.1 probable RNA-dependent RNA polymerase 1 [Benincasa hispida]5.8e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S   + ER+R+YDR+LS L+   VIGDKKFEFLAFS  QL ++S WMF SREG
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

TrEMBL top hitse value%identityAlignment
A0A0S1YCZ4 RNA-dependent RNA polymerase1.3e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S P + +R+R+YDRV+S LK   VIG+KKFEFLAFS  QL ++S WMF SREG
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

A0A1S3AV70 RNA-dependent RNA polymerase4.8e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S P +  R+R+YDRV+S LK   VIGDKKFEFLAFS  QL ++S WMF SR+G
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

A0A5A7TYE3 RNA-dependent RNA polymerase4.8e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S P +  R+R+YDRV+S LK   VIGDKKFEFLAFS  QL ++S WMF SR+G
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

A0A6J1CZM7 RNA-dependent RNA polymerase2.8e-0870.21Show/hide
Query:  ERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        ER+R+YDR+LS L+   VIGDKKFEFLAFS  QL ++SVWMF SREG
Subjt:  ERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

E5GB63 RNA-dependent RNA polymerase4.8e-0860.71Show/hide
Query:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG
        P  S P +  R+R+YDRV+S LK   VIGDKKFEFLAFS  QL ++S WMF SR+G
Subjt:  PYLSQPPSCERSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTSREG

SwissProt top hitse value%identityAlignment
O82504 RNA-dependent RNA polymerase 29.5e-0657.78Show/hide
Query:  RSRIYDRVLSYLKKYV-IGDKKFEFLAFSLHQLWKDSVWMFTSRE
        R+ IY+RVLS L + + +G K+FEFLAFS  QL  +SVWMF S E
Subjt:  RSRIYDRVLSYLKKYV-IGDKKFEFLAFSLHQLWKDSVWMFTSRE

Q0DXS3 Probable RNA-dependent RNA polymerase 11.6e-0556.52Show/hide
Query:  RSRIYDRVLSYLKKYV-IGDKKFEFLAFSLHQLWKDSVWMFTSREG
        R+ +Y RVLS L   + IG K FEFLAFS  QL  +S WMF SR+G
Subjt:  RSRIYDRVLSYLKKYV-IGDKKFEFLAFSLHQLWKDSVWMFTSREG

Q7XM31 Probable RNA-dependent RNA polymerase 26.2e-0558.14Show/hide
Query:  RSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTS
        ++ +Y R+LS LKK + IG K FEFLAFS  QL  +SVWMF S
Subjt:  RSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMFTS

Q9LQV2 RNA-dependent RNA polymerase 14.3e-0660.98Show/hide
Query:  RSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMF
        R+++YDR+ S L+   VIGDKKFEFLAFS  QL ++S WMF
Subjt:  RSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMF

Arabidopsis top hitse value%identityAlignment
AT1G14790.1 RNA-dependent RNA polymerase 13.0e-0760.98Show/hide
Query:  RSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMF
        R+++YDR+ S L+   VIGDKKFEFLAFS  QL ++S WMF
Subjt:  RSRIYDRVLSYLKK-YVIGDKKFEFLAFSLHQLWKDSVWMF

AT4G11130.1 RNA-dependent RNA polymerase 26.8e-0757.78Show/hide
Query:  RSRIYDRVLSYLKKYV-IGDKKFEFLAFSLHQLWKDSVWMFTSRE
        R+ IY+RVLS L + + +G K+FEFLAFS  QL  +SVWMF S E
Subjt:  RSRIYDRVLSYLKKYV-IGDKKFEFLAFSLHQLWKDSVWMFTSRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTTATCTATCTCAGCCCCCATCTTGTGAAAGAAGTAGAATTTATGATAGAGTACTGTCTTACCTTAAGAAATATGTCATTGGTGACAAGAAATTTGAGTTTCTTGCTTT
CTCCTTGCATCAACTGTGGAAAGATTCTGTTTGGATGTTTACTTCTAGGGAGGGA
mRNA sequenceShow/hide mRNA sequence
CCTTATCTATCTCAGCCCCCATCTTGTGAAAGAAGTAGAATTTATGATAGAGTACTGTCTTACCTTAAGAAATATGTCATTGGTGACAAGAAATTTGAGTTTCTTGCTTT
CTCCTTGCATCAACTGTGGAAAGATTCTGTTTGGATGTTTACTTCTAGGGAGGGA
Protein sequenceShow/hide protein sequence
PYLSQPPSCERSRIYDRVLSYLKKYVIGDKKFEFLAFSLHQLWKDSVWMFTSREG