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MS009092 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009092
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold687:596946..597299
RNA-Seq ExpressionMS009092
SyntenyMS009092
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.7e-1544Show/hide
Query:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLLKGVNSDLTEI
        G+ W  P  + WKLNT+A W    N GGIGWILRD  G +I   CR++        LE MA+ EGL++I +E      +ESD LE ++LL     D TEI
Subjt:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLLKGVNSDLTEI

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]5.2e-1447.13Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL
        W  P  + WKLNTDA W    N  GIGWILRD  G +I TGCR++        LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]5.2e-1447.13Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL
        W  P  + WKLNTDA W    N  GIGWILRD  G +I TGCR++        LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.3e-1242.27Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETI-VESDCLELVNLLKGVNSDLTE
        W  PP H W LN DA+W DS +RGGIGWI+R  +G ++  G R V      K+LEA A++EGL+++    +L  + +E+D  E+ +LL     DLT+
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETI-VESDCLELVNLLKGVNSDLTE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.0e-1343.52Show/hide
Query:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKE-------EMLETI-VESDCLELVNLLKG
        G+ W  P  + WKLNTDA W    N GGIGWILRD  G +I   CR++        LE MA+ EGL++I +E       E    I +ESD LE ++LL  
Subjt:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKE-------EMLETI-VESDCLELVNLLKG

Query:  VNSDLTEI
           D TEI
Subjt:  VNSDLTEI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.3e-1544Show/hide
Query:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLLKGVNSDLTEI
        G+ W  P  + WKLNT+A W    N GGIGWILRD  G +I   CR++        LE MA+ EGL++I +E      +ESD LE ++LL     D TEI
Subjt:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLLKGVNSDLTEI

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.5e-1447.13Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL
        W  P  + WKLNTDA W    N  GIGWILRD  G +I TGCR++        LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL

A0A6J1DNV9 uncharacterized protein LOC1110224036.2e-1342.27Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETI-VESDCLELVNLLKGVNSDLTE
        W  PP H W LN DA+W DS +RGGIGWI+R  +G ++  G R V      K+LEA A++EGL+++    +L  + +E+D  E+ +LL     DLT+
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETI-VESDCLELVNLLKGVNSDLTE

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X22.5e-1447.13Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL
        W  P  + WKLNTDA W    N  GIGWILRD  G +I TGCR++        LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLL

A0A6J1DSV1 uncharacterized protein LOC1110236089.5e-1443.52Show/hide
Query:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKE-------EMLETI-VESDCLELVNLLKG
        G+ W  P  + WKLNTDA W    N GGIGWILRD  G +I   CR++        LE MA+ EGL++I +E       E    I +ESD LE ++LL  
Subjt:  GSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKE-------EMLETI-VESDCLELVNLLKG

Query:  VNSDLTEI
           D TEI
Subjt:  VNSDLTEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0842.11Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEA--MAVVEGLKSINKEEMLETIVESDCLELVNLLKGVNSD
        W  PP+   K NTDATW     R GIGWILR+ +G ++  G R + PR ++ VLEA   A+   + ++++      I ESD   LVNLL   NSD
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEA--MAVVEGLKSINKEEMLETIVESDCLELVNLLKGVNSD

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)8.0e-0527.03Show/hide
Query:  RSTIEGSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSI
        R +     W+ PP    K N D+ ++   +     WI+RDSNG +I +GC  +   + +   EA+  +  L+ +
Subjt:  RSTIEGSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSI

AT4G29090.1 Ribonuclease H-like superfamily protein2.2e-0739.33Show/hide
Query:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEA--MAVVEGLKSINKEEMLETIVESDCLELVNLL
        W  PPH   K NTDATW     R GIGW+LR+  G +   G R + P+ +S VLEA   A+   + S+++ +    I ESD   L+ +L
Subjt:  WTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEA--MAVVEGLKSINKEEMLETIVESDCLELVNLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCCGGCGAAGCACAATTGAAGGGAGCAGTTGGACCACGCCACCACACCATAGATGGAAATTGAACACGGACGCTACCTGGATGGACTCCCTGAATCGTGGTGGCATCGG
CTGGATTCTCCGCGACTCTAATGGCTCGATGATTTCGACTGGGTGTAGGCTTGTGCATCCCAGATGGCAAAGCAAGGTTTTGGAGGCGATGGCTGTGGTTGAAGGTCTGA
AATCTATTAACAAGGAAGAAATGTTAGAAACCATTGTTGAGTCGGACTGCCTTGAACTAGTTAATCTGCTGAAAGGGGTGAATTCCGACCTAACTGAGATTAGCTTTTCA
TCGACGAAGCTTTGCGTCTACAAG
mRNA sequenceShow/hide mRNA sequence
GTCCGGCGAAGCACAATTGAAGGGAGCAGTTGGACCACGCCACCACACCATAGATGGAAATTGAACACGGACGCTACCTGGATGGACTCCCTGAATCGTGGTGGCATCGG
CTGGATTCTCCGCGACTCTAATGGCTCGATGATTTCGACTGGGTGTAGGCTTGTGCATCCCAGATGGCAAAGCAAGGTTTTGGAGGCGATGGCTGTGGTTGAAGGTCTGA
AATCTATTAACAAGGAAGAAATGTTAGAAACCATTGTTGAGTCGGACTGCCTTGAACTAGTTAATCTGCTGAAAGGGGTGAATTCCGACCTAACTGAGATTAGCTTTTCA
TCGACGAAGCTTTGCGTCTACAAG
Protein sequenceShow/hide protein sequence
VRRSTIEGSSWTTPPHHRWKLNTDATWMDSLNRGGIGWILRDSNGSMISTGCRLVHPRWQSKVLEAMAVVEGLKSINKEEMLETIVESDCLELVNLLKGVNSDLTEISFS
STKLCVYK