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MS009141 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009141
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S25
Genome locationscaffold220:199835..200368
RNA-Seq ExpressionMS009141
SyntenyMS009141
Gene Ontology termsGO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV70343.1 Ribosomal_S25 domain-containing protein [Cephalotus follicularis]4.9e-3596.39Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRLRINGSLARRAI+DLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

KAG7032934.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-3596.39Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

XP_004140903.1 40S ribosomal protein S25-2 [Cucumis sativus]3.7e-3596.39Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

XP_008456601.1 PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]1.7e-3598.8Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

XP_038885543.1 40S ribosomal protein S25 [Benincasa hispida]6.4e-3597.59Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAH SQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

TrEMBL top hitse value%identityAlignment
A0A0A0KB40 40S ribosomal protein S251.8e-3596.39Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

A0A0D6R5H1 40S ribosomal protein S252.4e-3596.39Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRLRINGSLAR+AIKDLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

A0A1S3C4W3 40S ribosomal protein S258.1e-3698.8Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

A0A5D3CKR9 40S ribosomal protein S258.1e-3698.8Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

A0A6J1BYI5 40S ribosomal protein S258.1e-3698.8Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S258.7e-3586.75Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKL+TPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+SAH+SQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

Q8GYL5 40S ribosomal protein S25-35.6e-3486.59Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN
        +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL+TPSILSDRLRINGSLARRAI++LMA+G+IRM+SAHSSQQIYTRAT+
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN

Q9SIK2 40S ribosomal protein S25-28.7e-3586.75Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL+TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

Q9SIW5 40S ribosomal protein S25-19.0e-3282.72Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRAT
        +KWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KL+TPSILSDRLRINGSLAR+AI+DLM +G+IRM+S HSSQQI TRAT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRAT

Q9T029 40S ribosomal protein S25-49.6e-3484.34Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL+TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein6.1e-3686.75Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL+TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

AT2G21580.2 Ribosomal protein S25 family protein6.1e-3686.75Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL+TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

AT4G34555.1 Ribosomal protein S25 family protein4.0e-3586.59Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN
        +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL+TPSILSDRLRINGSLARRAI++LMA+G+IRM+SAHSSQQIYTRAT+
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN

AT4G39200.1 Ribosomal protein S25 family protein6.8e-3584.34Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL+TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT

AT4G39200.2 Ribosomal protein S25 family protein6.8e-3584.34Show/hide
Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
        +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL+TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAAGTGAACAACATGGTTTTGTTTGATCAAGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCAC
TCCTTCAATCCTGTCTGATAGGCTGAGGATCAATGGATCACTAGCTCGACGAGCGATTAAGGATTTGATGGCACGAGGATCCATCAGAATGATCTCGGCTCATTCCAGTC
AGCAGATCTACACCAGAGCAACCAATACT
mRNA sequenceShow/hide mRNA sequence
CAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAAGTGAACAACATGGTTTTGTTTGATCAAGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCAC
TCCTTCAATCCTGTCTGATAGGCTGAGGATCAATGGATCACTAGCTCGACGAGCGATTAAGGATTTGATGGCACGAGGATCCATCAGAATGATCTCGGCTCATTCCAGTC
AGCAGATCTACACCAGAGCAACCAATACT
Protein sequenceShow/hide protein sequence
QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT