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MS009170 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009170
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBED-type domain-containing protein
Genome locationscaffold220:449676..449900
RNA-Seq ExpressionMS009170
SyntenyMS009170
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031690.1 uncharacterized protein E6C27_scaffold139G004740 [Cucumis melo var. makuwa]3.8e-1060Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL
        I A+DPV LEAID  MEDW+ DV+V   E        VT+QET VEHK SN +SCI +TDER++E+T DTDGNDL
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL

XP_022133724.1 uncharacterized protein LOC111006240 isoform X1 [Momordica charantia]2.8e-2998.59Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD
        I ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD

XP_022133726.1 uncharacterized protein LOC111006240 isoform X2 [Momordica charantia]1.0e-3198.67Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL
        I ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL

XP_031743736.1 uncharacterized protein LOC101215032 [Cucumis sativus]1.8e-1261.97Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD
        I A+DPV  EAID  MEDW      ++DEHKRW++VKVT+QET VEHK SN +SCI +TDER++E+T DTD
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD

XP_038884678.1 uncharacterized protein LOC120075395 isoform X1 [Benincasa hispida]3.8e-1065Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTD
        I A+DPV LEAIDV M+DW      +EDEHK W++VKVT+QET VEHK SN++SCID TD
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTD

TrEMBL top hitse value%identityAlignment
A0A0A0K9F6 Dimer_Tnp_hAT domain-containing protein8.7e-1360.27Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGN
        I A+DPV  EAID  MEDW      ++DEHKRW++VKVT+QET VEHK SN +SCI +TDER++E+T DTD +
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGN

A0A5B7CBF9 BED-type domain-containing protein5.9e-0946.58Show/hide
Query:  GALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGND
        GA DP+CLEA+DV + DW+ D    E E   WM+V + S+ TS+     +++ C DNTD+R S+DT D DGN+
Subjt:  GALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGND

A0A5D3BZ70 BED-type domain-containing protein1.8e-1060Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL
        I A+DPV LEAID  MEDW+ DV+V   E        VT+QET VEHK SN +SCI +TDER++E+T DTDGNDL
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL

A0A6J1BVZ0 uncharacterized protein LOC111006240 isoform X24.9e-3298.67Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL
        I ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL

A0A6J1BWT8 uncharacterized protein LOC111006240 isoform X11.3e-2998.59Show/hide
Query:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD
        I ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD
Subjt:  IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGGTGCACTTGATCCTGTTTGTTTGGAAGCCATTGATGTGATGATGGAAGATTGGTTGGCGGATGTTGAGGTAATGGAAGATGAGCACAAGAGGTGGATGAATGTGAA
GGTCACTAGTCAGGAAACCTCGGTGGAACATAAATTTTCCAATGTGAATAGTTGTATTGACAACACAGATGAGAGAGCCAGCGAGGACACAATAGATACAGATGGTAATG
ATTTG
mRNA sequenceShow/hide mRNA sequence
ATAGGTGCACTTGATCCTGTTTGTTTGGAAGCCATTGATGTGATGATGGAAGATTGGTTGGCGGATGTTGAGGTAATGGAAGATGAGCACAAGAGGTGGATGAATGTGAA
GGTCACTAGTCAGGAAACCTCGGTGGAACATAAATTTTCCAATGTGAATAGTTGTATTGACAACACAGATGAGAGAGCCAGCGAGGACACAATAGATACAGATGGTAATG
ATTTG
Protein sequenceShow/hide protein sequence
IGALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL