CuGenDBv2

Gene ID	MS009181
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cleavage stimulating factor 64
Genome location	scaffold220:536099..541983
RNA-Seq Expression	MS009181
Synteny	MS009181
Gene Ontology terms	GO:0031047 - gene silencing by RNA (biological process) GO:0042868 - antisense RNA metabolic process (biological process) GO:0045892 - negative regulation of transcription, DNA-templated (biological process) GO:0048589 - developmental growth (biological process) GO:0098789 - pre-mRNA cleavage required for polyadenylation (biological process) GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR025742 - Cleavage stimulation factor subunit 2, hinge domain IPR026896 - Transcription termination and cleavage factor, C-terminal domain IPR035979 - RNA-binding domain superfamily IPR038192 - Transcription termination and cleavage factor, C-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602216.1 Cleavage stimulating factor 64, partial [Cucurbita argyrosperma subsp. sororia]

7.3e-238

86.15

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLV NAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PTAHGESSQ QPIGLHIAITAAAVMAGALGGAQ A+NQNILQS  MPNDPLTLHLAKLSRSQLTE+MSGLKVMATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQ PNLRQPSTHPQLP  DIQQGQ SSLQIQPGLPPLAPNRMQTGFVPK KETQ+S+ PQNPLA HQFSASQRPPLQSQIQ + ALQGTLT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG S LPS++L G++ VRQQVQVPTS+SLKQHMRPPSQQYSGHGGAVIP HNAQIANPEA+PSLLP PSL DADFQPG S AY ASQ+VGSD DK S+
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
          LGVDGK+     FSGT NRPVKQ++LEDGKGS FS GGLSASV  NG+ +LG+ASDP L     SEKPT+MLP DVESALLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QRQQVIQLQQALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

XP_008456694.1 PREDICTED: cleavage stimulating factor 64 [Cucumis melo]

3.3e-238

84.81

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLVANAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PT HG+SSQHQPIGLHIAITAAAVMAGALGGAQ A+NQN LQSA MPNDPLTLHLAKLSRSQLTE+MSGLK MATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQKPNL+Q +THPQLP  +IQQGQPSS+QIQPGLPPLAPNRMQTGF+PK KETQ+SL PQNPLA HQFSAS RP LQSQIQ SH LQG LT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG SSLPSINLQGN+ +RQQVQ PTSSSLKQHMRPP QQY GHGGA+IP HNA I NPEA+PSLLPHPS+SD DFQPGPSTAYS  QIVGSDVDK S 
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
         PLGVDGK+T    FSGT NRPVKQ++LEDGKGS FSAGGLS S+ TNGSG+LG+ASDP +     SEKPT++LP++VES LLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QR QVI+LQ ALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

XP_022134026.1 cleavage stimulating factor 64 [Momordica charantia]

1.5e-280

99.42

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQLSHALQGTLTG
        MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQLSHALQGTLTG
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQLSHALQGTLTG

Query:  MPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRG
        MPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRG
Subjt:  MPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRG

Query:  PLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVI
        PLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSG+LGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVI
Subjt:  PLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVI

Query:  QLQQALRRDQIRPS
        QLQQALRRDQIRPS
Subjt:  QLQQALRRDQIRPS

XP_022963998.1 cleavage stimulating factor 64 [Cucurbita moschata]

1.2e-237

86.15

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLV NAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PTAHGESSQ QPIGLHIAITAAAVMAGALGGAQ A+NQNILQS  MPNDPLTLHLAKLSRSQLTE+MSGLKVMATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQ PNLRQPSTHPQLP  DIQQGQ SSLQIQPGLPPLAPNRMQTGFVPK KETQ+S+ PQNPLA HQFSASQRPPLQSQIQ + AL GTLT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG S LPS++L G++ VRQQVQVPTS+SLKQHMRPPSQQYSGHGGAVIP HNAQIANPEA+PSLLP PSL DADFQPG S AY ASQIVGSD DK S+
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
          LGVDGK+     FSGT NRPVKQ++LEDGKGS FS GGLSASV  NG+ +LG+ASDP L     SEKPT+MLP DVESALLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QRQQVIQLQQALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

XP_023550987.1 cleavage stimulating factor 64 [Cucurbita pepo subsp. pepo]

5.0e-239

86.73

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLV NAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PTAHGESSQ QPIGLHIAITAAAVMAGALGGAQ A+NQNILQS  MPNDPLTLHLAKLSRSQLTE MSGLKVMATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQ PNLRQPSTHPQLP  DIQQGQ SSLQIQPGLPPLAPNRMQTGFVPK KETQ+SL PQNPLA HQFSASQRPPLQSQIQ S ALQGTLT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG S LPS++L G++ VRQQVQVPTS+SLKQHMRPPSQQYSGHGGAVIP HNAQIANPEA+PSLLP PSL DADFQPG S AY ASQIVGSD D+ S+
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
         PLGVDGK+     FSGT NRPVK ++LEDGKGS FSAGGLSASV  NG+ +LG+ASDP L     SEKPT+MLP DVESALLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QRQQVIQLQQALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCI7 RRM domain-containing protein

1.0e-237

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLVANAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PT HGE+SQHQPIGLHIAITAAAVMAGALGGAQ A+NQN LQSA MPNDPLTLHLAKLSRSQLTE+MSGLK MATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQKPNL+Q +THPQLP  + QQGQPSSLQIQPGLPPLAPNRMQTGFVPK KETQ SL PQNPLA HQFSASQRP LQSQIQ SH LQG+LT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG SSLPSI+LQGN+ +RQQVQ P+SSSLKQHMRPP QQY GHGGA+IP HN  I NPEA+PSLLPHPSLSDADFQPGPSTAYS  QIVGSDVDK S 
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
         PLGVDGK+T    FSGT NRPVKQ++LEDGKGSSF AGGLS S+ TNGSG+LG+ASDP +     SEKPT++LP++VES LLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QR QVI+LQ ALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

A0A1S3C3F6 cleavage stimulating factor 64

1.6e-238

84.81

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLVANAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PT HG+SSQHQPIGLHIAITAAAVMAGALGGAQ A+NQN LQSA MPNDPLTLHLAKLSRSQLTE+MSGLK MATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQKPNL+Q +THPQLP  +IQQGQPSS+QIQPGLPPLAPNRMQTGF+PK KETQ+SL PQNPLA HQFSAS RP LQSQIQ SH LQG LT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG SSLPSINLQGN+ +RQQVQ PTSSSLKQHMRPP QQY GHGGA+IP HNA I NPEA+PSLLPHPS+SD DFQPGPSTAYS  QIVGSDVDK S 
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
         PLGVDGK+T    FSGT NRPVKQ++LEDGKGS FSAGGLS S+ TNGSG+LG+ASDP +     SEKPT++LP++VES LLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QR QVI+LQ ALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

A0A5D3BZN4 Cleavage stimulating factor 64

1.6e-238

84.81

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLVANAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PT HG+SSQHQPIGLHIAITAAAVMAGALGGAQ A+NQN LQSA MPNDPLTLHLAKLSRSQLTE+MSGLK MATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQKPNL+Q +THPQLP  +IQQGQPSS+QIQPGLPPLAPNRMQTGF+PK KETQ+SL PQNPLA HQFSAS RP LQSQIQ SH LQG LT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG SSLPSINLQGN+ +RQQVQ PTSSSLKQHMRPP QQY GHGGA+IP HNA I NPEA+PSLLPHPS+SD DFQPGPSTAYS  QIVGSDVDK S 
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
         PLGVDGK+T    FSGT NRPVKQ++LEDGKGS FSAGGLS S+ TNGSG+LG+ASDP +     SEKPT++LP++VES LLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPN--SEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QR QVI+LQ ALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

A0A6J1BWU0 cleavage stimulating factor 64

7.5e-281

99.42

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQLSHALQGTLTG
        MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQLSHALQGTLTG
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQLSHALQGTLTG

Query:  MPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRG
        MPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRG
Subjt:  MPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRG

Query:  PLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVI
        PLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSG+LGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVI
Subjt:  PLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVI

Query:  QLQQALRRDQIRPS
        QLQQALRRDQIRPS
Subjt:  QLQQALRRDQIRPS

A0A6J1HJJ0 cleavage stimulating factor 64

6.0e-238

86.15

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG+DRNREQGRGGPGLV NAGG
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        PTAHGESSQ QPIGLHIAITAAAVMAGALGGAQ A+NQNILQS  MPNDPLTLHLAKLSRSQLTE+MSGLKVMATQNKDLARQLLLARPQL+KALFQSQI
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT
        MLGMVTPQVLQ PNLRQPSTHPQLP  DIQQGQ SSLQIQPGLPPLAPNRMQTGFVPK KETQ+S+ PQNPLA HQFSASQRPPLQSQIQ + AL GTLT
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLA-HQFSASQRPPLQSQIQLSHALQGTLT

Query:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR
        G+PG S LPS++L G++ VRQQVQVPTS+SLKQHMRPPSQQYSGHGGAVIP HNAQIANPEA+PSLLP PSL DADFQPG S AY ASQIVGSD DK S+
Subjt:  GMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSR

Query:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE
          LGVDGK+     FSGT NRPVKQ++LEDGKGS FS GGLSASV  NG+ +LG+ASDP L     SEKPT+MLP DVESALLQQVLNLTPEQLNSLPLE
Subjt:  GPLGVDGKKT---SFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRL--APNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLE

Query:  QRQQVIQLQQALRRDQIRPS
        QRQQVIQLQQALRRDQ+RPS
Subjt:  QRQQVIQLQQALRRDQIRPS

SwissProt top hits

e value

%identity

Alignment

Q5RDA3 Cleavage stimulation factor subunit 2

2.8e-30

27.21

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A ++K  +  +  G G P ++ +  G
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
         T   E +                                        + ++  +A L   Q+ E+M  +K+    +   AR +LL  PQLA AL Q+Q+
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPS-----------THPQLPSQ----DIQQGQPSSLQIQP-------GLPPLAPNRMQTGF-----VPKV--------------
        ++ +V P++  K   RQ +            H   P       + Q  P + Q Q        G PPL    MQ G      +P                
Subjt:  MLGMVTPQVLQKPNLRQPS-----------THPQLPSQ----DIQQGQPSSLQIQP-------GLPPLAPNRMQTGF-----VPKV--------------

Query:  KETQISLPPQNPLAHQ---------FSASQRPPLQSQIQLSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIP
         + Q+ +P   P++ +          +A QR  L + +     L G     P   +L S+   G +  R  +  P       H  PP     GH     P
Subjt:  KETQISLPPQNPLAHQ---------FSASQRPPLQSQIQLSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIP

Query:  AHNAQIAN-PEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSD---VDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDG--KGSSFSAGGLSA-SVDT
         H  +    PE RP L+  P     D +  P          G D   ++  +    G+D +         R ++   +E    +  +    G+ A  +DT
Subjt:  AHNAQIAN-PEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSD---VDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDG--KGSSFSAGGLSA-SVDT

Query:  -------------------------------------NGSGRLGVASDPRLAPNSEKP--TAMLPRDVE-SALLQQVLNLTPEQLNSLPLEQRQQVIQLQ
                                              G+G  G +      P    P    + P+D E +AL+ QVL LT +Q+  LP EQRQ ++ L+
Subjt:  -------------------------------------NGSGRLGVASDPRLAPNSEKP--TAMLPRDVE-SALLQQVLNLTPEQLNSLPLEQRQQVIQLQ

Query:  QALRRDQIRP
        + +++    P
Subjt:  QALRRDQIRP

Q8BIQ5 Cleavage stimulation factor subunit 2

3.3e-31

27.7

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A ++K  +  +  G G P + +    
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        P     S +  P  +  A+                                    A L   Q+ E+M  +K+    +   AR +LL  PQLA AL Q+Q+
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQP------STHPQL---------PSQDIQQGQPSSLQIQP-------GLPPLAPNRMQTGFVPKVKETQI-------SLPP---
        ++ +V P++  K   RQ       S +PQ          P+  + Q  P + Q Q        G PP+    M  G    V+           SL P   
Subjt:  MLGMVTPQVLQKPNLRQP------STHPQL---------PSQDIQQGQPSSLQIQP-------GLPPLAPNRMQTGFVPKVKETQI-------SLPP---

Query:  ------------------QNPLAHQFSASQRPPLQSQIQLSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIP
                          Q P+    +A QR  L + +     L G     P   +L ++   G++  R  +  P       H  PP     GH G   P
Subjt:  ------------------QNPLAHQFSASQRPPLQSQIQLSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIP

Query:  AHNAQIANPEARP-SLLPHPSLSDADFQPGPSTAYSASQIVGSD---VDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDG--KGSSFSAGGLSA-SVDT
         H+ +   P A P  L+  P     D +  P  A       G D   ++  +    G+D +         R ++   +E    +  +  A  + A  +DT
Subjt:  AHNAQIANPEARP-SLLPHPSLSDADFQPGPSTAYSASQIVGSD---VDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDG--KGSSFSAGGLSA-SVDT

Query:  -------------------------------------NGSGRLGVASDPRLAPNSEKP--TAMLPRDVE-SALLQQVLNLTPEQLNSLPLEQRQQVIQLQ
                                              G+G  G +      P    P  + + P+D E +AL+ QVL LT +Q+  LP EQRQ ++ L+
Subjt:  -------------------------------------NGSGRLGVASDPRLAPNSEKP--TAMLPRDVE-SALLQQVLNLTPEQLNSLPLEQRQQVIQLQ

Query:  QALRRDQIRP
        + +++    P
Subjt:  QALRRDQIRP

Q8C7E9 Cleavage stimulation factor subunit 2 tau variant

7.2e-31

34.73

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPY+ATEEQL +I  EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A ++K  +  +  G   P + +  G 
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
        P    ++                                         + +T  +A L   Q+ E+M  +K+    +   AR +LL  PQLA AL Q+Q+
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKV-KETQISLPPQNPLAHQFSASQRPPLQSQIQLSH-ALQGTL
        ++ ++ P++  K   R+    P +P     + QP S     G  P  P     G  P +     + L  QNP A Q     R P++    L   ++QG  
Subjt:  MLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKV-KETQISLPPQNPLAHQFSASQRPPLQSQIQLSH-ALQGTL

Query:  TGMPGTSSLPS
         G+P    +P+
Subjt:  TGMPGTSSLPS

Q8HXM1 Cleavage stimulation factor subunit 2

1.3e-32

27.11

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        + VGNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A ++K  +  +  G G P ++ +  G
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Query:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI
         T   E +                                        + ++  +A L   Q+ E+M  +K+    +   AR +LL  PQLA AL Q+Q+
Subjt:  PTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQI

Query:  MLGMVTPQVLQKPNLRQPST------HPQL---------PSQDIQQGQPSSLQIQP-------GLPPLAPNRMQTGF-----VPKV--------------
        ++ +V P++  K   RQ +       +PQ           S  + Q  P + Q Q        G PPL    +Q G      +P                
Subjt:  MLGMVTPQVLQKPNLRQPST------HPQL---------PSQDIQQGQPSSLQIQP-------GLPPLAPNRMQTGF-----VPKV--------------

Query:  KETQISLPPQNPLAHQ---------FSASQRPPLQSQIQLSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIP
         + Q+ +P   P++ +          +A QR PL + +     L G     P   +L S+   G +  R  +  P       H  PP     GH     P
Subjt:  KETQISLPPQNPLAHQ---------FSASQRPPLQSQIQLSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIP

Query:  AHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDG------------KGSSFSAGGLS
         H  +       P   P P +++     GP        + G    +  R P G+D +     G   R ++   +E              +  +    G+ 
Subjt:  AHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDG------------KGSSFSAGGLS

Query:  A-SVDT-------------------------------------NGSGRLGVASDPRLAPNSEKP--TAMLPRDVE-SALLQQVLNLTPEQLNSLPLEQRQ
        A S+DT                                      G+G  G +      P    P    + P+D E +AL+ QVL LT +Q+  LP EQRQ
Subjt:  A-SVDT-------------------------------------NGSGRLGVASDPRLAPNSEKP--TAMLPRDVE-SALLQQVLNLTPEQLNSLPLEQRQ

Query:  QVIQLQQALRRDQIRP
         ++ L++ +++    P
Subjt:  QVIQLQQALRRDQIRP

Q9M9G6 Cleavage stimulating factor 64

5.4e-95

46.36

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANA--
        + VGNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDEETALSARRNLQ YEINGRQLRVDFAENDKG+D+ R+Q +GGPGL +    
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANA--

Query:  -------GGPTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTAT--NQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARP
               GGP    +S+ HQP+GLH+A TAA+V+AGALGG Q  +   Q+ LQ  A  +DPL LHLAK+SRSQLTEI+S +K+MATQNK+ ARQLL++RP
Subjt:  -------GGPTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTAT--NQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARP

Query:  QLAKALFQSQIMLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQ
        QL KA+F +Q+MLG+V+PQVLQ PN+ Q  +H  +    IQ  Q S   +   LPPLA    Q    P                     SQ P  QS  Q
Subjt:  QLAKALFQSQIMLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQ

Query:  LSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQI
            +   L   PG SS+       N P R QV+V  +   +Q + P S          +P       N   +PS +PH +L ++  Q G  T    S  
Subjt:  LSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQI

Query:  VGSDVDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLN
         G  +++   GP            ++NRP K M++ED + +S   G +S S+               L   ++ P   +  DV+S LLQQV+NLTPEQL 
Subjt:  VGSDVDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLN

Query:  SLPLEQRQQVIQLQQALRRDQI
         L  EQ+Q+V++LQQAL++D +
Subjt:  SLPLEQRQQVIQLQQALRRDQI

Arabidopsis top hits

e value

%identity

Alignment

AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein

5.5e-10

38.96

Show/hide

Query:  VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDK
        VGN+ +  T E L    +E G VV  R+V D +TG+ +GYGF  Y  +    +A  +L G+E+ GR +RV+ A+  K
Subjt:  VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDK

AT1G71800.1 cleavage stimulating factor 64

3.9e-96

46.36

Show/hide

Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANA--
        + VGNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDEETALSARRNLQ YEINGRQLRVDFAENDKG+D+ R+Q +GGPGL +    
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANA--

Query:  -------GGPTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTAT--NQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARP
               GGP    +S+ HQP+GLH+A TAA+V+AGALGG Q  +   Q+ LQ  A  +DPL LHLAK+SRSQLTEI+S +K+MATQNK+ ARQLL++RP
Subjt:  -------GGPTAHGESSQHQPIGLHIAITAAAVMAGALGGAQTAT--NQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARP

Query:  QLAKALFQSQIMLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQ
        QL KA+F +Q+MLG+V+PQVLQ PN+ Q  +H  +    IQ  Q S   +   LPPLA    Q    P                     SQ P  QS  Q
Subjt:  QLAKALFQSQIMLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQ

Query:  LSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQI
            +   L   PG SS+       N P R QV+V  +   +Q + P S          +P       N   +PS +PH +L ++  Q G  T    S  
Subjt:  LSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQI

Query:  VGSDVDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLN
         G  +++   GP            ++NRP K M++ED + +S   G +S S+               L   ++ P   +  DV+S LLQQV+NLTPEQL 
Subjt:  VGSDVDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLN

Query:  SLPLEQRQQVIQLQQALRRDQI
         L  EQ+Q+V++LQQAL++D +
Subjt:  SLPLEQRQQVIQLQQALRRDQI

AT1G73840.1 hydroxyproline-rich glycoprotein family protein

5.5e-18

29.9

Show/hide

Query:  LTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQIMLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNR
        L  +LA +++SQL +IMS +K +  QN   AR++L+  P L KALFQ+QIMLGMV P          P   P++  Q +QQ Q S   I P  P +  + 
Subjt:  LTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQIMLGMVTPQVLQKPNLRQPSTHPQLPSQDIQQGQPSSLQIQPGLPPLAPNR

Query:  MQTGFVPKVKETQISLPPQNPLAHQFSASQRP-----------PLQSQIQLSH-ALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPS
                V E   ++ PQ P+    +    P             QSQ + SH   QG L     + S P  +   N P        +      H+  P+
Subjt:  MQTGFVPKVKETQISLPPQNPLAHQFSASQRP-----------PLQSQIQLSH-ALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSLKQHMRPPS

Query:  -----QQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYS--------ASQIVGSDVDKP--SRGPLGVDGKK-----------TSFS
             QQ   H G         +A  ++RP    H     A  Q GP+T +          SQ +    ++P  S GP    G+              + 
Subjt:  -----QQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYS--------ASQIVGSDVDKP--SRGPLGVDGKK-----------TSFS

Query:  GTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKP--TAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVIQLQQALRR
        G  N       +   +G S+ AG   +S  T+  G   V    ++ P    P   A +  ++E ALLQQV++LTPEQ+N LP EQR QV+QLQQ LR+
Subjt:  GTINRPVKQMRLEDGKGSSFSAGGLSASVDTNGSGRLGVASDPRLAPNSEKP--TAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVIQLQQALRR

AT3G47120.1 RNA recognition motif (RRM)-containing protein

3.2e-10

32.14

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Query:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD----FAENDKGSDRNREQGRGGPGLV-
        + VG IP+D TE  L+ +  + G +V   L+ D+ TGK KG+ F  Y+D+ + + A  NL G  + GR ++VD    + ++++  +  R Q R   G+  
Subjt:  ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD----FAENDKGSDRNREQGRGGPGLV-

Query:  ANAGGPTAHGES
        A   G    G+S
Subjt:  ANAGGPTAHGES

AT5G61030.1 glycine-rich RNA-binding protein 3

1.1e-10

35.71

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Query:  VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG
        +G + Y   E+ L E   + G VV  R+++DRETG+ +G+GF  +   E A SA + L G +++GR ++V++A     +DR    G GG G     GG
Subjt:  VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGG

Sequences

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CDS sequence

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ATTTCAGTTGGCAATATACCATACGATGCTACTGAAGAGCAGCTAATAGAAATCTGCCAAGAAGTTGGGCCCGTAGTGTCTTTCAGATTAGTTATCGACAGAGAAACCGG
AAAACCGAAAGGCTACGGGTTTTGTGAGTACAAGGATGAAGAAACAGCTTTGAGTGCTCGTCGTAATCTTCAAGGTTATGAAATTAATGGTCGGCAGTTAAGAGTTGATT
TTGCTGAGAATGACAAGGGTTCGGACAGAAATAGAGAACAGGGTCGTGGTGGACCTGGTTTGGTTGCAAATGCTGGAGGCCCAACAGCCCATGGGGAATCCAGTCAACAT
CAACCAATTGGTCTTCATATAGCGATAACTGCTGCAGCCGTCATGGCAGGAGCCCTTGGTGGTGCACAAACTGCTACTAATCAGAATATTTTGCAGAGTGCAGCAATGCC
CAATGATCCTTTAACTTTACATCTGGCTAAACTTTCTAGGAGTCAGCTTACTGAAATTATGTCGGGGCTGAAGGTAATGGCTACACAAAACAAGGATCTGGCTCGTCAGC
TATTGTTGGCAAGACCACAATTGGCAAAAGCTCTTTTCCAGTCACAGATAATGCTTGGAATGGTCACACCACAAGTGTTGCAGAAGCCTAATTTACGGCAACCTTCTACT
CATCCTCAGCTTCCTTCGCAAGACATTCAGCAGGGTCAGCCATCATCTCTTCAAATTCAACCAGGGCTGCCCCCTCTTGCACCTAACAGGATGCAGACTGGTTTTGTACC
TAAAGTTAAAGAAACTCAAATATCTCTGCCGCCTCAAAATCCTTTGGCACATCAGTTTTCTGCATCCCAACGGCCTCCACTCCAGTCTCAAATTCAGCTATCACACGCTC
TACAAGGCACTTTGACTGGGATGCCTGGAACCTCATCACTTCCTTCCATAAATTTGCAGGGAAATTTACCTGTTAGGCAACAAGTTCAGGTGCCCACCTCCTCTTCTTTA
AAGCAGCACATGCGTCCCCCTTCTCAACAATATTCAGGGCATGGTGGAGCTGTAATTCCAGCGCATAATGCTCAGATTGCTAATCCAGAAGCTAGACCTTCTCTTTTGCC
TCACCCTTCCTTATCAGATGCAGATTTTCAGCCTGGCCCCTCCACAGCTTACAGTGCATCTCAGATAGTGGGCAGTGATGTCGATAAACCTTCTCGAGGTCCTCTTGGTG
TAGATGGTAAAAAAACTAGCTTTTCAGGAACAATCAATCGCCCTGTAAAGCAGATGAGACTAGAGGATGGGAAAGGCAGCTCTTTCTCAGCTGGAGGCCTGAGTGCATCA
GTAGATACCAACGGATCTGGACGACTTGGAGTTGCTTCAGATCCCCGTTTGGCGCCAAACTCTGAGAAACCAACTGCGATGCTTCCTCGCGACGTCGAGTCTGCACTACT
GCAACAAGTTTTGAATCTAACTCCCGAACAGCTTAACTCGTTGCCACTCGAACAAAGACAGCAAGTTATTCAACTCCAGCAAGCACTTCGCAGAGATCAAATTCGGCCAT
CC

mRNA sequence

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Protein sequence

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ISVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLVANAGGPTAHGESSQH
QPIGLHIAITAAAVMAGALGGAQTATNQNILQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKVMATQNKDLARQLLLARPQLAKALFQSQIMLGMVTPQVLQKPNLRQPST
HPQLPSQDIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKVKETQISLPPQNPLAHQFSASQRPPLQSQIQLSHALQGTLTGMPGTSSLPSINLQGNLPVRQQVQVPTSSSL
KQHMRPPSQQYSGHGGAVIPAHNAQIANPEARPSLLPHPSLSDADFQPGPSTAYSASQIVGSDVDKPSRGPLGVDGKKTSFSGTINRPVKQMRLEDGKGSSFSAGGLSAS
VDTNGSGRLGVASDPRLAPNSEKPTAMLPRDVESALLQQVLNLTPEQLNSLPLEQRQQVIQLQQALRRDQIRPS

MS009181 (gene) of Bitter gourd (TR) v1 genome