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MS009193 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009193
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNucleolar protein 16, putative
Genome locationscaffold220:625433..625846
RNA-Seq ExpressionMS009193
SyntenyMS009193
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456721.1 PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo]6.4e-6485.51Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
        MARQLQI+H  QGT Q+GMAGVSLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT + NATE EN N+EMFFSREQQA++W KN
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN

Query:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        ILMGGKCQLPDFSGVILYD +GN VTPAKTP PLLTWK
Subjt:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

XP_011656615.1 uncharacterized protein LOC105435757 [Cucumis sativus]3.1e-6688.41Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
        MARQLQI+H  QGTAQ+GMAGVSLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT R N TE ENGNDEMFFSREQQA++W KN
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN

Query:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        ILMGGKCQLPDFSGVILYD +GNAVTPAKTP PLLTWK
Subjt:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

XP_022134433.1 uncharacterized protein LOC111006683 [Momordica charantia]1.2e-75100Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
        MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN

Query:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
Subjt:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

XP_023512486.1 uncharacterized protein LOC111777221 [Cucurbita pepo subsp. pepo]5.1e-6181.94Show/hide
Query:  MARQLQ-ILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHR-----ANATELENGNDEMFFSREQQA
        MARQLQ ++H  Q TAQ+GMAG SLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT R      NATE ENGNDEMFFSREQ+A
Subjt:  MARQLQ-ILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHR-----ANATELENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        AVW+KNILMGGKCQLPDFSGVILYD++GN VTPA+T  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

XP_038886392.1 uncharacterized protein LOC120076591 [Benincasa hispida]1.3e-6485.31Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHR-----ANATELENGNDEMFFSREQQAA
        MARQLQ++HP Q TAQ+GMAGVSLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATV+TT R      NATE EN NDEMFFSREQQAA
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHR-----ANATELENGNDEMFFSREQQAA

Query:  VWQKNILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        +WQKNILMGGKCQLPDFSGVILYD +GNAVTPAKTP PLLTWK
Subjt:  VWQKNILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

TrEMBL top hitse value%identityAlignment
A0A0A0K8P1 Uncharacterized protein1.5e-6688.41Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
        MARQLQI+H  QGTAQ+GMAGVSLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT R N TE ENGNDEMFFSREQQA++W KN
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN

Query:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        ILMGGKCQLPDFSGVILYD +GNAVTPAKTP PLLTWK
Subjt:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

A0A1S3C3W7 uncharacterized protein LOC1034965803.1e-6485.51Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
        MARQLQI+H  QGT Q+GMAGVSLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT + NATE EN N+EMFFSREQQA++W KN
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN

Query:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        ILMGGKCQLPDFSGVILYD +GN VTPAKTP PLLTWK
Subjt:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

A0A5A7SQ79 Putative Nucleolar protein 163.1e-6485.51Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
        MARQLQI+H  QGT Q+GMAGVSLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT + NATE EN N+EMFFSREQQA++W KN
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN

Query:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        ILMGGKCQLPDFSGVILYD +GN VTPAKTP PLLTWK
Subjt:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

A0A6J1C1Z5 uncharacterized protein LOC1110066836.0e-76100Show/hide
Query:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
        MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN
Subjt:  MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKN

Query:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
        ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
Subjt:  ILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

A0A6J1JR28 uncharacterized protein LOC1114875771.6e-6080.56Show/hide
Query:  MARQLQ-ILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHR-----ANATELENGNDEMFFSREQQA
        MARQLQ ++H  Q TAQ+GMAG SLL CAFALFMCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT R      NATE EN NDEMFFSREQ+A
Subjt:  MARQLQ-ILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHR-----ANATELENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK
         VW+KNILMGGKCQLPDFSGVILYD++GN VTPA+T +PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDADGNAVTPAKTPYPLLTWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein2.0e-0735.62Show/hide
Query:  TVVTTHRANATELENGNDEMFFSREQQAAVWQKNILMGGKCQLPDFSGVILYDADGNAV------TPAKTPYP
        T ++         +N  +E   + E++  +WQ+ ILMGGKC+  DFSGVI YD++G  +      +P  TP P
Subjt:  TVVTTHRANATELENGNDEMFFSREQQAAVWQKNILMGGKCQLPDFSGVILYDADGNAV------TPAKTPYP

AT1G71740.1 unknown protein3.6e-2546.92Show/hide
Query:  PPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQ-QAAVWQKNILMGGKCQ
        PP  T  + +  + L   +  L   ASH+++  RRW AC  YG    +PVI L  + T++           NG+  M  S +Q +  +WQKNILMGGKCQ
Subjt:  PPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQ-QAAVWQKNILMGGKCQ

Query:  LPDFSGVILYDADGNAVTPAKTPYPLLTWK
        LPDFSGVILYDADG  V PAK   PLLTWK
Subjt:  LPDFSGVILYDADGNAVTPAKTPYPLLTWK

AT3G14760.1 unknown protein3.2e-0567.86Show/hide
Query:  VWQKNILMGGKCQLPDFSGVILYDADGN
        VWQ+ ILMG KC+LP FSG+ILYD  G+
Subjt:  VWQKNILMGGKCQLPDFSGVILYDADGN

AT3G18560.1 unknown protein1.7e-0648.84Show/hide
Query:  EQQAAVWQKNILMGGKCQLPDFSGVILYDADGNAV--TPAKTP
        E++  VWQ+ ILMGGKC+  D+SGVI YD  G+ +   P ++P
Subjt:  EQQAAVWQKNILMGGKCQLPDFSGVILYDADGNAV--TPAKTP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCAACTGCAAATACTGCATCCTCCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCTTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCA
CGCCCGGAAATGGCGCCGTCGCTGGAATGCTTGCTTGGATTACGGCTTTGAGTTTGAGGACCCTGTAATAGAGCTGAACCAGGAAGCAACGGTTGTGACTACACACCGAG
CGAATGCCACCGAGCTGGAGAATGGCAATGATGAAATGTTCTTCAGCAGAGAGCAACAAGCTGCTGTGTGGCAGAAGAACATACTCATGGGCGGGAAGTGTCAGCTGCCA
GACTTCTCGGGCGTCATATTATACGACGCTGATGGAAATGCTGTAACCCCTGCCAAAACTCCCTATCCGTTACTCACCTGGAAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCAACTGCAAATACTGCATCCTCCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCTTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCA
CGCCCGGAAATGGCGCCGTCGCTGGAATGCTTGCTTGGATTACGGCTTTGAGTTTGAGGACCCTGTAATAGAGCTGAACCAGGAAGCAACGGTTGTGACTACACACCGAG
CGAATGCCACCGAGCTGGAGAATGGCAATGATGAAATGTTCTTCAGCAGAGAGCAACAAGCTGCTGTGTGGCAGAAGAACATACTCATGGGCGGGAAGTGTCAGCTGCCA
GACTTCTCGGGCGTCATATTATACGACGCTGATGGAAATGCTGTAACCCCTGCCAAAACTCCCTATCCGTTACTCACCTGGAAG
Protein sequenceShow/hide protein sequence
MARQLQILHPPQGTAQIGMAGVSLLFCAFALFMCASHARKWRRRWNACLDYGFEFEDPVIELNQEATVVTTHRANATELENGNDEMFFSREQQAAVWQKNILMGGKCQLP
DFSGVILYDADGNAVTPAKTPYPLLTWK