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MS009244 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009244
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPectinesterase
Genome locationscaffold1115:70169..70327
RNA-Seq ExpressionMS009244
SyntenyMS009244
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148123.1 probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]5.0e-0966.04Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SKS   + S FTFQN NV VS E Q  KDQV  SLGRPWR+YST+ F+ESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

XP_022946598.1 pectinesterase-like [Cucurbita moschata]1.0e-0654.72Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK++   +S F FQN  V VS E    KD+V+  LGRPW+ YST+ FIESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

XP_022999348.1 pectinesterase 2-like [Cucurbita maxima]1.0e-0654.72Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK++   +S F FQN  V V+ E    KD+V+  LGRPWR YST+ FIESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

XP_023546999.1 pectinesterase-like [Cucurbita pepo subsp. pepo]1.0e-0654.72Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK++   +S F FQN  V VS E    KD+V+  LGRPW+ YST+ FIESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

XP_038889244.1 probable pectinesterase/pectinesterase inhibitor 39 [Benincasa hispida]2.8e-0760.38Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK+     S F FQN NV VSSE    KD+VM  LGRPWR YS + FIESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

TrEMBL top hitse value%identityAlignment
A0A0A0KQN0 Pectinesterase8.6e-0756.6Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK   +  S F FQN NV VS E  P KD V   LGRPWR YS + FI+SFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

A0A6J1D381 Pectinesterase2.4e-0966.04Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SKS   + S FTFQN NV VS E Q  KDQV  SLGRPWR+YST+ F+ESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

A0A6J1G4B3 Pectinesterase5.1e-0754.72Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK++   +S F FQN  V VS E    KD+V+  LGRPW+ YST+ FIESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

A0A6J1KJG6 Pectinesterase5.1e-0754.72Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK++   +S F FQN  V V+ E    KD+V+  LGRPWR YST+ FIESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

A0A6J1KPG6 Pectinesterase1.1e-0650.94Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        SK++  ++S F FQN  V VS E    +D+V+  LGRPWR+YS + F+ESFLD
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

SwissProt top hitse value%identityAlignment
Q4PT34 Probable pectinesterase 563.2e-0643.4Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        S+ +    S F+FQ  N+  SS+  P K  V   LGRPWR++S + F+ESF+D
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

Arabidopsis top hitse value%identityAlignment
AT1G11370.1 Pectin lyase-like superfamily protein2.2e-0743.4Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        S+ +    S F+FQ  N+  SS+  P K  V   LGRPWR++S + F+ESF+D
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

AT1G11580.1 methylesterase PCR A4.0e-0432.69Show/hide
Query:  KSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        + D ++ +  + Q   +  SS+  P K  V   LGRPW+ YS    ++SF+D
Subjt:  KSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

AT3G27980.1 Plant invertase/pectin methylesterase inhibitor superfamily6.8e-0436.54Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFL
        S++    +S F+ QN N+  SS+       V   LGRPWR +ST+  ++SF+
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFL

AT4G02300.1 Plant invertase/pectin methylesterase inhibitor superfamily3.0e-0432.08Show/hide
Query:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        S++ + + +  +  N  ++ + +  P K+   A LGRPWR YS    I+SF+D
Subjt:  SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD

AT5G20860.1 Plant invertase/pectin methylesterase inhibitor superfamily6.8e-0430.77Show/hide
Query:  KSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD
        ++D  + + F   +  +   S+  P K +  + LGRPWR YS    +ES++D
Subjt:  KSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCAAATCTGACGCACATAAAGAGAGCAACTTCACCTTCCAAAACTACAACGTAATAGTGTCATCAGAGACACAGCCAGGCAAGGATCAAGTGATGGCGTCTCTT
GGACGACCATGGAGGAGTTACTCCACCATTACTTTCATTGAGTCTTTCCTGGAT
mRNA sequenceShow/hide mRNA sequence
TCCAAATCTGACGCACATAAAGAGAGCAACTTCACCTTCCAAAACTACAACGTAATAGTGTCATCAGAGACACAGCCAGGCAAGGATCAAGTGATGGCGTCTCTT
GGACGACCATGGAGGAGTTACTCCACCATTACTTTCATTGAGTCTTTCCTGGAT
Protein sequenceShow/hide protein sequence
SKSDAHKESNFTFQNYNVIVSSETQPGKDQVMASLGRPWRSYSTITFIESFLD