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MS009245 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009245
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPlant invertase/pectin methylesterase inhibitor superfamily
Genome locationscaffold1115:95098..95277
RNA-Seq ExpressionMS009245
SyntenyMS009245
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0016020 - membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648077.1 hypothetical protein Csa_018832 [Cucumis sativus]2.1e-1157.81Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NNF+AQ+L+F+N  G +N Q V     AH+TTYYKC  L +Q+TL+VRG  QFFK+CD+YGSV+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

KAG6572379.1 Pectinesterase 2, partial [Cucurbita argyrosperma subsp. sororia]9.7e-0950Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        ++FMAQ LSF+N    +N QVV     A +TTYYKC  L +Q+TL+++G +QFF++CD+YG+V+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

XP_022148123.1 probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]3.6e-1158.73Show/hide
Query:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        +F+AQ L+FQN  G EN Q V     A+YT YYKCV + YQ+TL+VRG FQ FK+CDVYGS++
Subjt:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

XP_022999348.1 pectinesterase 2-like [Cucurbita maxima]2.5e-0953.97Show/hide
Query:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NFMAQ+L+FQN  G +  Q V     A +T+YYKCV L YQ+TL+  G  QFFK+CD+YGS++
Subjt:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

XP_031741287.1 probable pectinesterase 56 [Cucumis sativus]2.1e-1157.81Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NNF+AQ+L+F+N  G +N Q V     AH+TTYYKC  L +Q+TL+VRG  QFFK+CD+YGSV+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

TrEMBL top hitse value%identityAlignment
A0A5D3BKF8 Pectinesterase8.0e-0950Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NNF+A++L+F+N  G +N Q V     AH+T Y+KC  L +Q+TL+V+G  QFFK+C++YGSV+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

A0A6J1D381 Pectinesterase1.7e-1158.73Show/hide
Query:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        +F+AQ L+FQN  G EN Q V     A+YT YYKCV + YQ+TL+VRG FQ FK+CDVYGS++
Subjt:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

A0A6J1GK92 Pectinesterase1.0e-0851.56Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NNFMAQ LSF+N    ++ Q V     A YT YYKC  L +Q+TL+ +G +QFFK CD+YG+V+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

A0A6J1GLJ0 Pectinesterase1.0e-0851.56Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NNFMAQ LSF+N    ++ Q V     A YT YYKC  L +Q+TL+ +G +QFFK CD+YG+V+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

A0A6J1KJG6 Pectinesterase1.2e-0953.97Show/hide
Query:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NFMAQ+L+FQN  G +  Q V     A +T+YYKCV L YQ+TL+  G  QFFK+CD+YGS++
Subjt:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

SwissProt top hitse value%identityAlignment
O81301 Probable pectinesterase/pectinesterase inhibitor 403.2e-0739.06Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        + F+A+ LSF NY G E  Q V     +  + YY+C    YQ+T++V    QF+++CD+YG+V+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

P85076 Pectinesterase2.5e-0738.71Show/hide
Query:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        F+A+ +SF+NY G    Q V     A ++ +Y+C  + YQ+TL+V    QF+ +CDVYG+++
Subjt:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

Q94CB1 Probable pectinesterase/pectinesterase inhibitor 256.1e-0638.71Show/hide
Query:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        FMA  ++F+N  G E  Q V     A  +++Y+C    YQ+TL+V    QF+++CD+YG+V+
Subjt:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

Q9M3B0 Probable pectinesterase/pectinesterase inhibitor 341.2e-0638.71Show/hide
Query:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        F+A+ ++F+N+ G    Q V     A +   Y+C I+ YQ+TL+V    QFF++CD+YG+V+
Subjt:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

Q9SRX4 Probable pectinesterase/pectinesterase inhibitor 74.7e-0638.1Show/hide
Query:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NF+A  ++F+N  G E  Q V     A ++ +Y C    YQ+TL+     QF+++CDVYG+V+
Subjt:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

Arabidopsis top hitse value%identityAlignment
AT1G02810.1 Plant invertase/pectin methylesterase inhibitor superfamily3.3e-0738.1Show/hide
Query:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        NF+A  ++F+N  G E  Q V     A ++ +Y C    YQ+TL+     QF+++CDVYG+V+
Subjt:  NFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

AT3G10720.1 Plant invertase/pectin methylesterase inhibitor superfamily4.3e-0738.71Show/hide
Query:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        FMA  ++F+N  G E  Q V     A  +++Y+C    YQ+TL+V    QF+++CD+YG+V+
Subjt:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

AT3G10720.2 Plant invertase/pectin methylesterase inhibitor superfamily4.3e-0738.71Show/hide
Query:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        FMA  ++F+N  G E  Q V     A  +++Y+C    YQ+TL+V    QF+++CD+YG+V+
Subjt:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

AT3G49220.1 Plant invertase/pectin methylesterase inhibitor superfamily8.7e-0838.71Show/hide
Query:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        F+A+ ++F+N+ G    Q V     A +   Y+C I+ YQ+TL+V    QFF++CD+YG+V+
Subjt:  FMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN

AT4G02320.1 Plant invertase/pectin methylesterase inhibitor superfamily2.3e-0839.06Show/hide
Query:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN
        + F+A+ LSF NY G E  Q V     +  + YY+C    YQ+T++V    QF+++CD+YG+V+
Subjt:  NNFMAQTLSFQNYVGSENVQVVV----AHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACAATTTTATGGCCCAAACCTTATCATTTCAAAATTACGTGGGATCGGAAAATGTGCAAGTGGTAGTTGCTCACTACACAACTTATTATAAGTGTGTAATTCTC
GATTATCAAGAAACTCTACATGTGAGAGGATGGTTCCAGTTCTTTAAACAGTGTGATGTATATGGAAGCGTCAAT
mRNA sequenceShow/hide mRNA sequence
AACAATTTTATGGCCCAAACCTTATCATTTCAAAATTACGTGGGATCGGAAAATGTGCAAGTGGTAGTTGCTCACTACACAACTTATTATAAGTGTGTAATTCTC
GATTATCAAGAAACTCTACATGTGAGAGGATGGTTCCAGTTCTTTAAACAGTGTGATGTATATGGAAGCGTCAAT
Protein sequenceShow/hide protein sequence
NNFMAQTLSFQNYVGSENVQVVVAHYTTYYKCVILDYQETLHVRGWFQFFKQCDVYGSVN