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MS009262 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009262
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold195:71202..71492
RNA-Seq ExpressionMS009262
SyntenyMS009262
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6633086.1 hypothetical protein CIPAW_12G024400 [Carya illinoinensis]2.2e-1846.81Show/hide
Query:  KIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF
        KI+SWN+RGL    KRLK+K  +++   DV+CLQETK++P D  +I+SLW+    GW+T+D+ G SGGIL+MW++  +++ E   G FS++  F
Subjt:  KIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF

OVA15438.1 hypothetical protein BVC80_1229g10 [Macleaya cordata]2.7e-1647.78Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFS
        +KI+SWNI+G    +KR+KI+K ++   L +V LQETK++     ++  LW   DIGW  +DA+G SGGILI+WN   + VK+ IKG FS
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFS

XP_023873314.1 uncharacterized protein LOC111985902 [Quercus suber]7.7e-1641.05Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF
        +KI+SWN+RGL + +KR +++  ++N   DVVCLQETK++  + ++I+SLW  + + WS + + G SGG+L+MW+   ++  E   G FS+S  F
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF

XP_038876676.1 uncharacterized protein LOC120069076 [Benincasa hispida]1.3e-1546.74Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSIS
        MKIV+W+ RGL    KRL +K+F++  + D+V +QETK    + S IKSLWSSK++G + ++A GKSGG+L +W++ +I V  + K  FS+S
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSIS

XP_042952212.1 uncharacterized protein LOC122289294 [Carya illinoinensis]2.2e-1846.81Show/hide
Query:  KIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF
        KI+SWN+RGL    KRLK+K  +++   DV+CLQETK++P D  +I+SLW+    GW+T+D+ G SGGIL+MW++  +++ E   G FS++  F
Subjt:  KIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF

TrEMBL top hitse value%identityAlignment
A0A200QYA3 Uncharacterized protein1.3e-1647.78Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFS
        +KI+SWNI+G    +KR+KI+K ++   L +V LQETK++     ++  LW   DIGW  +DA+G SGGILI+WN   + VK+ IKG FS
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFS

A0A2N9EGL0 Reverse transcriptase domain-containing protein3.2e-1542.11Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF
        ++I+SWN+RGL    KR  +K  +++   DVVCLQETK+   D  L++SLWS+  IGW  ++A+  +GGIL+MW++  +   +   GVFS+S ++
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF

A0A2N9F2D8 Reverse transcriptase domain-containing protein3.8e-1643.16Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF
        +KI++WN+RGL   EKRL+IK  +++   DV+CLQETK++    S++KSLW    + W+ + ++G +GGIL+MW+   +   EV  G FS+S  F
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF

A0A2N9J9W3 Reverse transcriptase domain-containing protein3.2e-1542.39Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSIS
        ++I+SWN+RGL   +KR  +K  +++   DVVCLQETK+   D  L++SLWS+  +GW  ++A+  +GGIL+MW++  +   + I G FS+S
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSIS

A0A6J1E2G6 uncharacterized protein LOC1110254051.1e-1545.26Show/hide
Query:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF
        MK ++WN+RGL   +K   IK+F+   + +VV LQETK+   D  ++KSLWS+  I WS +DA G + GILI+WN+  +   E+I+GVFS++  F
Subjt:  MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTGTATCATGGAATATCAGGGGGCTGTGCAAGGATGAAAAAAGGTTGAAAATTAAGAAATTTGTCCAGAACCACAGCCTGGATGTGGTATGCCTACAAGAAAC
AAAAATTCAACCGTTTGATCCATCTTTGATTAAATCTCTATGGAGTTCTAAAGATATAGGTTGGTCAACCATTGATGCACTTGGAAAGTCTGGAGGAATTCTAATAATGT
GGAATGAAGGCCGGATTAGTGTAAAAGAAGTCATCAAGGGGGTATTCTCTATCAGTTCTTATTTCCTTTTC
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTGTATCATGGAATATCAGGGGGCTGTGCAAGGATGAAAAAAGGTTGAAAATTAAGAAATTTGTCCAGAACCACAGCCTGGATGTGGTATGCCTACAAGAAAC
AAAAATTCAACCGTTTGATCCATCTTTGATTAAATCTCTATGGAGTTCTAAAGATATAGGTTGGTCAACCATTGATGCACTTGGAAAGTCTGGAGGAATTCTAATAATGT
GGAATGAAGGCCGGATTAGTGTAAAAGAAGTCATCAAGGGGGTATTCTCTATCAGTTCTTATTTCCTTTTC
Protein sequenceShow/hide protein sequence
MKIVSWNIRGLCKDEKRLKIKKFVQNHSLDVVCLQETKIQPFDPSLIKSLWSSKDIGWSTIDALGKSGGILIMWNEGRISVKEVIKGVFSISSYFLF