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MS009265 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009265
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold195:132523..132821
RNA-Seq ExpressionMS009265
SyntenyMS009265
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.9e-1855Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG
        CQI +K GH A +CY+ MNFS Q RHP  QLAAM  N M++  S  N   FWL  SGCN ++TN+L NL L+N YNGEET+ V N QPLNI +   +D G
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1955.88Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP
        CQI +K  H A +CY+ MNFS QDRH   QLAAM  N M++  S  N   FWL  SG N ++TN+L NL L+N YNGEET+ VGNGQPLNI +  +G L 
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP

Query:  TP
        TP
Subjt:  TP

TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.9e-1855Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG
        CQI +K GH A +CY+ MNFS Q RHP  QLAAM  N M++  S  N   FWL  SGCN ++TN+L NL L+N YNGEET+ V N QPLNI +   +D G
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]2.2e-1850.98Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTD---PSPSNAFWLFSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP
        CQI +K GH A +CY+ MNFS Q +HP  QL AM  N M++     + +N     SGCN ++TN+L NL L+N YNGEET+ VGNGQP+NI +  +G L 
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTD---PSPSNAFWLFSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP

Query:  TP
        TP
Subjt:  TP

XP_022156563.1 uncharacterized protein LOC111023438 [Momordica charantia]2.2e-1346.46Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNAFWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLPT
        CQI  K GH+A +C++ MN+S Q RHP  QL AM+ N      + SN  WL  SGCN ++T DL  L   + Y+G+E I VG GQ L I H  +G L T
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNAFWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLPT

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918251.1e-1850.98Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTD---PSPSNAFWLFSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP
        CQI +K GH A +CY+ MNFS Q +HP  QL AM  N M++     + +N     SGCN ++TN+L NL L+N YNGEET+ VGNGQP+NI +  +G L 
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTD---PSPSNAFWLFSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP

Query:  TP
        TP
Subjt:  TP

A0A5A7U7J4 Putative mitochondrial protein1.4e-1855Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG
        CQI +K GH A +CY+ MNFS Q RHP  QLAAM  N M++  S  N   FWL  SGCN ++TN+L NL L+N YNGEET+ V N QPLNI +   +D G
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG

A0A5A7VGG0 Retrotransposon protein5.7e-2055.88Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP
        CQI +K  H A +CY+ MNFS QDRH   QLAAM  N M++  S  N   FWL  SG N ++TN+L NL L+N YNGEET+ VGNGQPLNI +  +G L 
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLP

Query:  TP
        TP
Subjt:  TP

A0A5D3C579 Putative mitochondrial protein1.4e-1855Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG
        CQI +K GH A +CY+ MNFS Q RHP  QLAAM  N M++  S  N   FWL  SGCN ++TN+L NL L+N YNGEET+ V N QPLNI +   +D G
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNA--FWL-FSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITH---IDNG

A0A6J1DQZ0 uncharacterized protein LOC1110234381.0e-1346.46Show/hide
Query:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNAFWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLPT
        CQI  K GH+A +C++ MN+S Q RHP  QL AM+ N      + SN  WL  SGCN ++T DL  L   + Y+G+E I VG GQ L I H  +G L T
Subjt:  CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNAFWLF-SGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTCAAATTTATAACAAGTTTGGACACAATGCTTTTAATTGTTACCATCTAATGAATTTTTCTGCCCAAGATCGTCATCCTTTGGAGCAACTTGCAGCAATGATAGACAA
TTTTATGTCCACTGATCCTTCTCCATCTAATGCTTTTTGGTTGTTTAGTGGTTGCAACACTTATCTCACTAATGATTTGATAAATTTAAGACTGACAAATACTTATAATG
GAGAAGAGACTATTGTTGTTGGCAATGGGCAGCCCTTGAACATCACACATATAGATAATGGTTTTCTTCCCACTCCA
mRNA sequenceShow/hide mRNA sequence
TGTCAAATTTATAACAAGTTTGGACACAATGCTTTTAATTGTTACCATCTAATGAATTTTTCTGCCCAAGATCGTCATCCTTTGGAGCAACTTGCAGCAATGATAGACAA
TTTTATGTCCACTGATCCTTCTCCATCTAATGCTTTTTGGTTGTTTAGTGGTTGCAACACTTATCTCACTAATGATTTGATAAATTTAAGACTGACAAATACTTATAATG
GAGAAGAGACTATTGTTGTTGGCAATGGGCAGCCCTTGAACATCACACATATAGATAATGGTTTTCTTCCCACTCCA
Protein sequenceShow/hide protein sequence
CQIYNKFGHNAFNCYHLMNFSAQDRHPLEQLAAMIDNFMSTDPSPSNAFWLFSGCNTYLTNDLINLRLTNTYNGEETIVVGNGQPLNITHIDNGFLPTP