CuGenDBv2

Gene ID	MS009285
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	scaffold813:64038..65037
RNA-Seq Expression	MS009285
Synteny	MS009285
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0058617.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa]

3.5e-53

91.38

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLSFPLDHF
        LK+ELEV LS PLD F
Subjt:  LKFELEVTLSFPLDHF

TYK10426.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa]

3.5e-53

91.38

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLSFPLDHF
        LK+ELEV LS PLD F
Subjt:  LKFELEVTLSFPLDHF

XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]

1.4e-49

90.91

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLS
        LK+ELE  +S
Subjt:  LKFELEVTLS

XP_008461312.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo]

1.0e-49

90.91

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLS
        LK+ELE  +S
Subjt:  LKFELEVTLS

XP_022150995.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]

2.6e-53

98.18

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLS
        LKFELE  LS
Subjt:  LKFELEVTLS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like

5.0e-50

90.91

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLS
        LK+ELE  +S
Subjt:  LKFELEVTLS

A0A5A7UV57 DNA-directed RNA polymerases II, IV and V subunit 11-like

1.7e-53

91.38

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLSFPLDHF
        LK+ELEV LS PLD F
Subjt:  LKFELEVTLSFPLDHF

A0A5D3CJ64 DNA-directed RNA polymerases II, IV and V subunit 11-like

1.7e-53

91.38

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLSFPLDHF
        LK+ELEV LS PLD F
Subjt:  LKFELEVTLSFPLDHF

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like

1.3e-53

98.18

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLS
        LKFELE  LS
Subjt:  LKFELEVTLS

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

1.1e-49

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTLS
        LK+ELE   S
Subjt:  LKFELEVTLS

SwissProt top hits

e value

%identity

Alignment

P52435 DNA-directed RNA polymerase II subunit RPB11-a

3.0e-23

44.04

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTL
        L+    V +
Subjt:  LKFELEVTL

Q32P79 DNA-directed RNA polymerase II subunit RPB11

3.0e-23

44.04

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELEVTL
        L+    V +
Subjt:  LKFELEVTL

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

6.6e-47

80.73

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK--FELEV
        LK  FE EV
Subjt:  LK--FELEV

Q86JJ5 DNA-directed RNA polymerase II subunit rpb11

4.6e-24

47.06

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHT+GN++RMQL  D +++FA Y++PHPL++ + IRI T + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q9VJE4 DNA-directed RNA polymerase II subunit RPB11

6.6e-23

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKEL
        MN P  +E F++ EG KK+  E DTK+ NAA F + +EDHT+GN++R QL +D NVLFA Y++PHPL+++ +IRI T +  SP +A+  A+ DL  EL
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKEL

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

4.7e-48

80.73

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK--FELEV
        LK  FE EV
Subjt:  LK--FELEV

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

2.6e-43

63.31

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++R                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIR--------------------------

Query:  ----IHTASQSSPMQAYNQAVNDLDKELDHLK--FELEV
            IHT SQSSPMQAYNQA+NDLDKELD+LK  FE EV
Subjt:  ----IHTASQSSPMQAYNQAVNDLDKELDHLK--FELEV

Sequences

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CDS sequence

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ATGAACGTCCCCGATCGTTACGAGCGATTCGTCGTGCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGATACGAAGATCATGAACGCGGCGACCTTCATACTAGAGAG
AGAGGATCATACCGTCGGAAACATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTCGCTGCATACCAGCTTCCGCACCCTCTTAAGTACAGAATACTTATCC
GGATACACACAGCTAGCCAATCTTCACCGATGCAGGCGTATAATCAAGCTGTAAATGATTTGGACAAGGAGCTTGACCATTTGAAATTTGAGCTTGAGGTAACGCTTTCA
TTCCCCCTTGACCATTTTCTTCTGCAATTTGGGTGTGAT

mRNA sequence

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Protein sequence

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MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELEVTLS
FPLDHFLLQFGCD

MS009285 (gene) of Bitter gourd (TR) v1 genome