CuGenDBv2

Gene ID	MS009306
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	thylakoid lumenal 19 kDa protein, chloroplastic
Genome location	scaffold813:210015..210843
RNA-Seq Expression	MS009306
Synteny	MS009306
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR002683 - PsbP, C-terminal IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022146111.1 thylakoid lumenal 19 kDa protein, chloroplastic [Momordica charantia]

3.2e-127

99.19

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Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT
        MATAISPLAVFSAAAASS TTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT

Query:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG
        AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG
Subjt:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG

Query:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        AHSLISVTCAKNKLYAHFVNAPTPEWNRDR+LLRHVHESFKTIGSY
Subjt:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

XP_022959905.1 thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata]

6.6e-104

81.93

Show/hide

Query:  MATAISPLAVFSA-AAASSATTAQKPPQTPPLSRLHLPTLQSKPL--LPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASK
        MATAISPLA FSA AAA++     KP QTPPL +  +P LQS P   L +L+A  SAIAVAAILST  PSLAD G AFNVYYGTAASAANYGG+GGNASK
Subjt:  MATAISPLAVFSA-AAASSATTAQKPPQTPPLSRLHLPTLQSKPL--LPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASK

Query:  KDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEID
        KD+AEY+YDVP+GWKERLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASA+ +S+EEKKDENGQ+YYVYEID
Subjt:  KDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEID

Query:  GSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        G+G HSLISVTCAKNKLYAHFVNAPTPEW+RD+D+LRHVHESFKT+GSY
Subjt:  GSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

XP_022991922.1 thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]

1.3e-104

83.74

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Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT
        MATAISPLA FSAAAAS+ TTA K PQ P +    +P LQSKP L +L A  SAIA+AAI+ST+ PSLAD G AFNVYYGTAASAANYGG GGNA KKD+
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT

Query:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG
        AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASA+S S+EEKKDENGQ+YY YEID +G
Subjt:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG

Query:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
         HSLISVTCAKNKLYAHFVNAPTPEWNRD+D+LRHVHESFKTIGSY
Subjt:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

XP_023547955.1 thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo]

2.0e-105

83.81

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Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLH-LPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKD
        MA AISPLA FSAAAAS+ TTA K PQ PP  +   +P LQSKP L +L A  SAIA+AAI+ST+ PSLAD G AFNVYYGTAASAANYGG GGNA+KKD
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLH-LPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKD

Query:  TAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGS
        +AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASA+S S+EEKKDENGQ+YY YEIDG+
Subjt:  TAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGS

Query:  GAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        G HSLISVTCAKNKLYAHFVNAPTPEWNRD+D+LRHVHESFKTIGSY
Subjt:  GAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

XP_038896859.1 thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]

5.8e-108

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Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPA----LAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNAS
        MATAI+PLA FSAAAAS+ TTA KPPQTPPL +  +P LQSKP L      ++  A+ IAVAAILST  PSLADTGAAFNVYYGTAASAANYGG GGNAS
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPA----LAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNAS

Query:  KKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEI
        KKDTAEY+YDVP+GWKERLVSKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASA+S  +EEKKDENGQ+YYVYEI
Subjt:  KKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEI

Query:  DGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        DG+G HSLISVTCAKNKLYAHFVNAPTPEWNRD+D+LRHVHESFKTIGSY
Subjt:  DGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CES2 thylakoid lumenal 19 kDa protein, chloroplastic

7.1e-104

81.6

Show/hide

Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLL----PALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNAS
        MATAI+PLA  ++ AAS+ TTA K PQT PL +  +P LQSK  L      ++  A+AIAVAAIL+TA PSLADTGAAFNVYYGTAASAANYGG GGNA+
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLL----PALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNAS

Query:  KKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEI
        KKDTAEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASA+S  ++EKKDENGQVYYVYEI
Subjt:  KKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEI

Query:  DGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        DG+G HSLISVTCAKNKLYAHFVNAPTPEWNRD+D+LRHVHESFKT+GSY
Subjt:  DGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

A0A5D3CG07 Thylakoid lumenal 19 kDa protein

7.1e-104

81.6

Show/hide

Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLL----PALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNAS
        MATAI+PLA  ++ AAS+ TTA K PQT PL +  +P LQSK  L      ++  A+AIAVAAIL+TA PSLADTGAAFNVYYGTAASAANYGG GGNA+
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLL----PALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNAS

Query:  KKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEI
        KKDTAEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASA+S  ++EKKDENGQVYYVYEI
Subjt:  KKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEI

Query:  DGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        DG+G HSLISVTCAKNKLYAHFVNAPTPEWNRD+D+LRHVHESFKT+GSY
Subjt:  DGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

A0A6J1CYC9 thylakoid lumenal 19 kDa protein, chloroplastic

1.6e-127

99.19

Show/hide

Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT
        MATAISPLAVFSAAAASS TTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT

Query:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG
        AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG
Subjt:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG

Query:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        AHSLISVTCAKNKLYAHFVNAPTPEWNRDR+LLRHVHESFKTIGSY
Subjt:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

A0A6J1H7M1 thylakoid lumenal 19 kDa protein, chloroplastic-like

3.2e-104

81.93

Show/hide

Query:  MATAISPLAVFSA-AAASSATTAQKPPQTPPLSRLHLPTLQSKPL--LPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASK
        MATAISPLA FSA AAA++     KP QTPPL +  +P LQS P   L +L+A  SAIAVAAILST  PSLAD G AFNVYYGTAASAANYGG+GGNASK
Subjt:  MATAISPLAVFSA-AAASSATTAQKPPQTPPLSRLHLPTLQSKPL--LPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASK

Query:  KDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEID
        KD+AEY+YDVP+GWKERLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASA+ +S+EEKKDENGQ+YYVYEID
Subjt:  KDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEID

Query:  GSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
        G+G HSLISVTCAKNKLYAHFVNAPTPEW+RD+D+LRHVHESFKT+GSY
Subjt:  GSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

A0A6J1JN94 thylakoid lumenal 19 kDa protein, chloroplastic-like

6.4e-105

83.74

Show/hide

Query:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT
        MATAISPLA FSAAAAS+ TTA K PQ P +    +P LQSKP L +L A  SAIA+AAI+ST+ PSLAD G AFNVYYGTAASAANYGG GGNA KKD+
Subjt:  MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDT

Query:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG
        AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASA+S S+EEKKDENGQ+YY YEID +G
Subjt:  AEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSG

Query:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY
         HSLISVTCAKNKLYAHFVNAPTPEWNRD+D+LRHVHESFKTIGSY
Subjt:  AHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGSY

SwissProt top hits

e value

%identity

Alignment

P82658 Thylakoid lumenal 19 kDa protein, chloroplastic

7.1e-77

68.25

Show/hide

Query:  PLLPALAAHASAIAVAAILSTAS--------PSLADTGAAFNVYYGTAASAANYGGYGGNASKKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPK
        P++P   A     ++AA L+  S        P+  +    + +YYGTAASAANYGGYGGN+ +K +AEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPK
Subjt:  PLLPALAAHASAIAVAAILSTAS--------PSLADTGAAFNVYYGTAASAANYGGYGGNASKKDTAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPK

Query:  KRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLR
        K++EKEYLTFLAG RQLAP+DVILNNLALSDV LQD IA AD V SEE+KDE GQVYY+YEIDG G HSLI+VTC+KN+LYAHFVNAP PEWNRD D L 
Subjt:  KRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRDLLR

Query:  HVHESFKTIGS
        H+ +SFKT+ S
Subjt:  HVHESFKTIGS

Arabidopsis top hits

e value

%identity

Alignment

AT3G63540.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

1.7e-62

Show/hide

Query:  DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSGAHSLI
        +V +GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQLAP+DVILNNLALSDV LQD IA AD V SEE+KDE GQVYY+YEIDG G HSLI
Subjt:  DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSGAHSLI

Query:  SVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGS
        +VTC+KNKLYAHFVNAP PEWNRD D L H+ +SFKT+ S
Subjt:  SVTCAKNKLYAHFVNAPTPEWNRDRDLLRHVHESFKTIGS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCACCGCAATCTCCCCCTTGGCGGTCTTCTCCGCCGCCGCCGCATCCTCCGCCACAACCGCTCAAAAACCGCCGCAAACTCCTCCACTATCTAGGCTCCATCTACC
TACTCTCCAATCTAAGCCCCTACTCCCCGCATTAGCCGCCCACGCCTCCGCCATCGCCGTAGCCGCGATCCTGAGCACCGCTTCGCCGTCACTGGCCGACACCGGCGCCG
CTTTCAACGTCTACTACGGCACCGCTGCCAGCGCTGCCAACTACGGCGGCTACGGCGGCAACGCCAGCAAGAAAGACACGGCGGAGTACGTGTACGACGTGCCGGACGGC
TGGAAGGAGCGATTGGTATCGAAGGTCGAAAAAGGAACTAATGGAACGGACAGCGAATTTTACAATCCGAAGAAGCGATCGGAGAAAGAATACCTAACTTTCCTTGCCGG
AATCCGGCAATTGGCGCCGAAGGACGTGATTCTGAACAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCCGATAGTGTCTCGTCGGAGGAGAAGA
AGGACGAGAACGGACAAGTTTATTATGTGTACGAGATCGACGGCTCCGGAGCTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTACGCGCATTTCGTTAAC
GCGCCGACGCCGGAGTGGAACCGGGACCGGGACTTGCTCCGGCATGTGCACGAGTCGTTCAAGACGATCGGATCGTAT

mRNA sequence

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Protein sequence

Show/hide protein sequence

MATAISPLAVFSAAAASSATTAQKPPQTPPLSRLHLPTLQSKPLLPALAAHASAIAVAAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDTAEYVYDVPDG
WKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADSVSSEEKKDENGQVYYVYEIDGSGAHSLISVTCAKNKLYAHFVN
APTPEWNRDRDLLRHVHESFKTIGSY

MS009306 (gene) of Bitter gourd (TR) v1 genome