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MS009312 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009312
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE2
Genome locationscaffold813:242969..243484
RNA-Seq ExpressionMS009312
SyntenyMS009312
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010676001.1 PREDICTED: uncharacterized protein LOC104891911 [Beta vulgaris subsp. vulgaris]8.8e-3952.47Show/hide
Query:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
        KI+ N PFYLG  +R GD ITPIRLKL           +          L+GTIT VVP    +DWV++H MLVSW M+TIDPEV+SMLSNY++AK LWD
Subjt:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD

Query:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC
         L+E F ++N P I +LK  I++CE SK MS+A+YF KL VL DEL   +  I+C C KC+C
Subjt:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC

XP_021717245.1 uncharacterized protein LOC110685089 [Chenopodium quinoa]3.8e-4257.41Show/hide
Query:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
        KI+TNSPFYLGP +R GDFIT  RLKL           +          L+GTIT   P    DDW+ IH MLVSW M+TI PEVRSMLS Y++AK LWD
Subjt:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD

Query:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC
         L E F ++N P I QLK +ISRCE  K+MS+AVY+SKL VL DELDKHE LI C C KC C
Subjt:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC

XP_021746757.1 uncharacterized protein LOC110712595 [Chenopodium quinoa]2.2e-4257.06Show/hide
Query:  TKIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLW
        TKI+ NSP+YLGP +R GDFIT  RLKL           +          L+GTIT   P    DDWV IH MLVSW M+TIDPEVR+MLSNY +AK LW
Subjt:  TKIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLW

Query:  DYLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC
        D L E F ++N P I Q+K +I+RCE SK+M +AVYFSKL VL DELDKHE LI C   KCTC
Subjt:  DYLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC

XP_021756883.1 uncharacterized protein LOC110721955 [Chenopodium quinoa]6.5e-4256.79Show/hide
Query:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
        KI++NSP+YLGP +R GDFIT  RLKL           +          L+GTIT   P    DDWV IH MLVS  M+TIDPEVRS LSNY++AK LWD
Subjt:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD

Query:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC
         L ELF ++N P I Q+K +ISRC+  K+M +AVYFSKL VL DELDKHE LI+C C KCTC
Subjt:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC

XP_021762963.1 uncharacterized protein LOC110727691 [Chenopodium quinoa]6.8e-3954.32Show/hide
Query:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
        KI+TNSPFYLG  +R GDFITPIRLKL           +          L+GTIT  V     DDWV++  MLVSW M+TIDPEV+SMLSNY++AK LWD
Subjt:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD

Query:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC
         L+E F ++  P I QLK  I+RCE  KNMS+A+YF K  VL DE+ K E LI+C C KC C
Subjt:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC

TrEMBL top hitse value%identityAlignment
A0A3Q7IBW4 Uncharacterized protein3.6e-3849.08Show/hide
Query:  TKIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLW
        +KI+ ++PFYLG  +R GDFITPIRLKL    +     ++          L+GTI   V     +DW+++H MLVSW M+TIDPEV+SMLSNY++AK LW
Subjt:  TKIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLW

Query:  DYLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC
        D L+E F ++N P I+QLK  I++CE +K MS+A+Y+ KL VL D+L   + LI+C+C KC+C
Subjt:  DYLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC

A0A438DPL1 Retrovirus-related Pol polyprotein from transposon RE21.1e-3146.3Show/hide
Query:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
        K + NSPF+LG  +R GDFITP RL+     +     +L          L GTIT   P +   DW  ++ MLVSW  +TIDPEV+S LS + DAK LW+
Subjt:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD

Query:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT
        +L + ++++N P I QLK  I++CE SK+MS+  Y+ KL VL +EL KHE LISC  C  CT
Subjt:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT

A0A438EGZ1 Retrovirus-related Pol polyprotein from transposon TNT 1-948.6e-3246.3Show/hide
Query:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
        K + NSPF+LG  +R GDFITP RL+     +     +L          L GTIT   P +   DW  ++ MLVSW  +TIDPEV+S LS + DAK LW+
Subjt:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD

Query:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT
        +L + ++++N P I QLK  I++CE SK+MS+  Y+ KL VL +EL KHE LISC  C  CT
Subjt:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT

A0A438GG88 Retrovirus-related Pol polyprotein from transposon RE28.6e-3246.3Show/hide
Query:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
        K + NSPF+LG  +R GDFITP RL+     +     +L          L GTIT   P +   DW  ++ MLVSW  +TIDPEV+S LS + DAK LW+
Subjt:  KIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD

Query:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT
        +L + ++++N P I QLK  I++CE SK+MS+  Y+ KL VL +EL KHE LISC  C  CT
Subjt:  YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT

A0A438ILD3 Uncharacterized protein1.9e-3146.84Show/hide
Query:  NSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWDYLNE
        NSPF+LG  +R GDFITP RL+     +     +L          L GTIT   P +   DW  ++ MLVSW  +TIDPEV+S LS + DAK LW++L +
Subjt:  NSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWDYLNE

Query:  LFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT
         ++++N P I QLK  I++CE SK+MS+  Y+ KL VL +EL KHE LISC  C  CT
Subjt:  LFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCD-CRKCT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGCAAAAACTCTATTAGGAGTTGCCACGAAGATTGATACAAATTCGCCGTTTTACCTAGGGCCACTAGAACGTCATGGTGATTTCATTACTCCAATTCGTCTAAAGTT
GATAATTTTGACAAATAGTCTCATGCAATTCGAGTTGCCTTTTCGTCTCGATGAAAATTTGGTTATTCTTAATGGAACTATCACTAAGGTTGTTCCGTCTTGGATAAATG
ATGATTGGGTCATGATTCATTATATGCTAGTTTCATGGTACATGGATACAATCGATCCTGAGGTACGTTCTATGCTATCTAATTATAATGATGCCAAGCTGTTATGGGAT
TATTTGAATGAACTATTTTCCATTATGAACGATCCTCATATTTACCAACTTAAGGGAGATATTAGTCGTTGTGAACATAGCAAAAATATGTCAATTGCTGTCTACTTTAG
TAAATTGTATGTCTTGTTGGATGAGTTAGATAAACATGAACTTCTGATTTCTTGCGACTGTAGAAAGTGTACTTGT
mRNA sequenceShow/hide mRNA sequence
GTTGCAAAAACTCTATTAGGAGTTGCCACGAAGATTGATACAAATTCGCCGTTTTACCTAGGGCCACTAGAACGTCATGGTGATTTCATTACTCCAATTCGTCTAAAGTT
GATAATTTTGACAAATAGTCTCATGCAATTCGAGTTGCCTTTTCGTCTCGATGAAAATTTGGTTATTCTTAATGGAACTATCACTAAGGTTGTTCCGTCTTGGATAAATG
ATGATTGGGTCATGATTCATTATATGCTAGTTTCATGGTACATGGATACAATCGATCCTGAGGTACGTTCTATGCTATCTAATTATAATGATGCCAAGCTGTTATGGGAT
TATTTGAATGAACTATTTTCCATTATGAACGATCCTCATATTTACCAACTTAAGGGAGATATTAGTCGTTGTGAACATAGCAAAAATATGTCAATTGCTGTCTACTTTAG
TAAATTGTATGTCTTGTTGGATGAGTTAGATAAACATGAACTTCTGATTTCTTGCGACTGTAGAAAGTGTACTTGT
Protein sequenceShow/hide protein sequence
VAKTLLGVATKIDTNSPFYLGPLERHGDFITPIRLKLIILTNSLMQFELPFRLDENLVILNGTITKVVPSWINDDWVMIHYMLVSWYMDTIDPEVRSMLSNYNDAKLLWD
YLNELFSIMNDPHIYQLKGDISRCEHSKNMSIAVYFSKLYVLLDELDKHELLISCDCRKCTC