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MS009340 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009340
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationscaffold813:461777..462010
RNA-Seq ExpressionMS009340
SyntenyMS009340
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575660.1 hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2177.78Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        R+R+TKGLEL QRSFSITASNSSD NSIKEE     A+ DAQGPPFLTILAG FVFSL++WM+SSA TSLIGLVVKLI  K
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

KAG6593336.1 hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia]6.4e-2172.84Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        R+++TKGLEL QRSFSITASNSSDGNS KE     + TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVVKLI  K
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

XP_022145635.1 uncharacterized protein LOC111015032 [Momordica charantia]6.9e-31100Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        RFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

XP_022953425.1 uncharacterized protein LOC111455984 [Cucurbita moschata]2.0e-2279.01Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        R+R+TKGLEL QRSFSITASNSSDGNSIKEE     A+ DAQGPPFLTILAG FVFSL++WM+SSA TSLIGLVVKLI  K
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

XP_022991945.1 uncharacterized protein LOC111488436 [Cucurbita maxima]2.9e-2179.49Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLI
        R+R+TKGLELS RSFSITASNSSDGNSI+EE     A+ DAQGPPFLTILAG FVFSL++WM+SSA TSLIGLVVKLI
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLI

TrEMBL top hitse value%identityAlignment
A0A6J1CV15 uncharacterized protein LOC1110150323.3e-31100Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        RFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

A0A6J1GPL5 uncharacterized protein LOC1114559849.7e-2379.01Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        R+R+TKGLEL QRSFSITASNSSDGNSIKEE     A+ DAQGPPFLTILAG FVFSL++WM+SSA TSLIGLVVKLI  K
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

A0A6J1H506 uncharacterized protein LOC1114606322.6e-2070.37Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        R+++TKGL+L QRSFSITASNSSDGNS KE     + TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI L VKLI  K
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

A0A6J1JUC2 uncharacterized protein LOC1114884361.4e-2179.49Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLI
        R+R+TKGLELS RSFSITASNSSDGNSI+EE     A+ DAQGPPFLTILAG FVFSL++WM+SSA TSLIGLVVKLI
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLI

A0A6J1KVQ7 uncharacterized protein LOC1114980253.1e-2172.84Show/hide
Query:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
        R+++TKGL+L QRSFSITASNSSDGNS KEE      TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVVKLI  K
Subjt:  RFRHTKGLELSQRSFSITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTGCAGGTTCAGGCACACCAAAGGATTGGAATTAAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCATTAAGGAGGAAGCAACTGGTGA
TGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTCTCCCTCATAATTTGGATGATCAGTTCTGCTTTCACGTCACTTATAGGACTAGTCGTCAAGC
TGATCCCGGCAAAG
mRNA sequenceShow/hide mRNA sequence
TTTTGCAGGTTCAGGCACACCAAAGGATTGGAATTAAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCATTAAGGAGGAAGCAACTGGTGA
TGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTCTCCCTCATAATTTGGATGATCAGTTCTGCTTTCACGTCACTTATAGGACTAGTCGTCAAGC
TGATCCCGGCAAAG
Protein sequenceShow/hide protein sequence
FCRFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK