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MS009397 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009397
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCytochrome b6
Genome locationscaffold813:1042838..1043059
RNA-Seq ExpressionMS009397
SyntenyMS009397
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0022904 - respiratory electron transport chain (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005797 - Cytochrome b/b6, N-terminal
IPR016174 - Di-haem cytochrome, transmembrane
IPR023530 - Cytochrome b6, PetB
IPR027387 - Cytochrome b/b6-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNT67432.1 hypothetical protein BRADI_3g27315v3 [Brachypodium distachyon]2.9e-2383.1Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELLCGSASV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

QZN05751.1 cytochrome b6 [Alsophila denticulata]3.8e-2384.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

YP_002970674.1 cytochrome b6 [Alsophila spinulosa]3.8e-2384.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

YP_009490514.1 cytochrome b6 [Cibotium barometz]3.8e-2384.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

YP_009502347.1 cytochrome b6 [Alsophila podophylla]3.8e-2384.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

TrEMBL top hitse value%identityAlignment
A0A287WHJ4 CYTB_NTER domain-containing protein1.4e-2383.1Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELLCGSASV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

A0A2K2CZH6 CYTB_NTER domain-containing protein1.4e-2383.1Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELLCGSASV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

A0A344AIQ6 Cytochrome b61.9e-2384.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

A0A7L8XKV7 Cytochrome b61.9e-2384.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

C5HY84 Cytochrome b61.9e-2384.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

SwissProt top hitse value%identityAlignment
P06248 Cytochrome b63.2e-2584.51Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIPIIGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

P41628 Cytochrome b64.2e-2583.1Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

Q3BAK7 Cytochrome b64.2e-2583.1Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP+AIPIIGS L+ELL GSASV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

Q85A24 Cytochrome b65.5e-2581.69Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIP++GS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

Q85X07 Cytochrome b64.2e-2583.1Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIP+IGS L+ELL GS SV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

Arabidopsis top hitse value%identityAlignment
AT2G07727.1 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal7.5e-0936.11Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNTL
        W  GV++ +L +    IGY LPW Q+ +    ++  +  AIP++G  ++  L G  SV  +TL RF+SL+ L
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNTL

ATCG00720.1 photosynthetic electron transfer B1.5e-2581.69Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT
        WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELL GSASV QSTLTRFYSL+T
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNT

ATMG00220.1 apocytochrome b7.5e-0936.11Show/hide
Query:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNTL
        W  GV++ +L +    IGY LPW Q+ +    ++  +  AIP++G  ++  L G  SV  +TL RF+SL+ L
Subjt:  WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGTTACAGGTGTGATTCTGGTTGTATTGACCGTATCCTTTGGTGTAATTGGTTATTCCTTACCTTGGGACCAAATTGGTTATAGAGCAGTCAAAATTGTAATAGGTGT
ACCGAAAGCTATTCCAATAATAGGGTCACATTTGATAGAATTATTATGCGGAAGTGCTAGTGTGAGACAATCTACCTTGACTCGTTTTTATAGTTTAAACACTTTAACTT
TT
mRNA sequenceShow/hide mRNA sequence
TGGGTTACAGGTGTGATTCTGGTTGTATTGACCGTATCCTTTGGTGTAATTGGTTATTCCTTACCTTGGGACCAAATTGGTTATAGAGCAGTCAAAATTGTAATAGGTGT
ACCGAAAGCTATTCCAATAATAGGGTCACATTTGATAGAATTATTATGCGGAAGTGCTAGTGTGAGACAATCTACCTTGACTCGTTTTTATAGTTTAAACACTTTAACTT
TT
Protein sequenceShow/hide protein sequence
WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNTLTF