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MS009427 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009427
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionlate embryogenesis abundant protein Dc3-like
Genome locationscaffold813:1224444..1224938
RNA-Seq ExpressionMS009427
SyntenyMS009427
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461081.1 PREDICTED: late embryogenesis abundant protein D-7 [Cucumis melo]1.9e-3671.53Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q +RAGETKGRAEEKTNQ M TMGEKARE K+KTYETGRA +DKA  +           A +TKE ASD AQA REKAQ+GKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMA-QHDDDVDKQSDPTTVYR
        VKSMAQGAA+AVKSTFGMA Q+DDDVDK +   T YR
Subjt:  VKSMAQGAADAVKSTFGMA-QHDDDVDKQSDPTTVYR

XP_011659535.1 late embryogenesis abundant protein D-7 [Cucumis sativus]7.8e-3873.68Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q +RAGETKGRAEEKTNQ M  MGEKARE K+KTYETGRAAR+KA  +           A +TKE ASDAAQ  REKAQ+GKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTT
        VKSMAQGAA+AVKSTFGMAQHD+DVDK S+ TT
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTT

XP_022150150.1 late embryogenesis abundant protein Dc3-like [Momordica charantia]1.0e-6199.27Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MA+HDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYRG
        VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYRG
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYRG

XP_023548700.1 late embryogenesis abundant protein 7 [Cucurbita pepo subsp. pepo]1.2e-3569.29Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q ++AGETKGRAEEKT+Q M TMG+KARE K+KTYETG+AA+DKA  + E +  +  E    T    SD AQAAREKAQSGKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQ---SDPTTVYRG
        VKSMAQGAA+AVKSTFGMA HDDDV K+   SD TT  RG
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQ---SDPTTVYRG

XP_038899464.1 LOW QUALITY PROTEIN: late embryogenesis abundant protein 2-like [Benincasa hispida]2.2e-4075.37Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q +RAGETKGRAEEKTN+ M TMG+KARE K+KTYETGRAAR+KA  +           A +TKE ASD AQ AREKAQSGKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTV
        VKSMAQGAADAVKSTFGMAQHDD+VDK SDPTT+
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTV

TrEMBL top hitse value%identityAlignment
A0A0A0K6E1 Uncharacterized protein3.8e-3873.68Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q +RAGETKGRAEEKTNQ M  MGEKARE K+KTYETGRAAR+KA  +           A +TKE ASDAAQ  REKAQ+GKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTT
        VKSMAQGAA+AVKSTFGMAQHD+DVDK S+ TT
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTT

A0A1S3CEC9 late embryogenesis abundant protein D-79.3e-3771.53Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q +RAGETKGRAEEKTNQ M TMGEKARE K+KTYETGRA +DKA  +           A +TKE ASD AQA REKAQ+GKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMA-QHDDDVDKQSDPTTVYR
        VKSMAQGAA+AVKSTFGMA Q+DDDVDK +   T YR
Subjt:  VKSMAQGAADAVKSTFGMA-QHDDDVDKQSDPTTVYR

A0A5A7UUB6 Late embryogenesis abundant protein D-79.3e-3771.53Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q +RAGETKGRAEEKTNQ M TMGEKARE K+KTYETGRA +DKA  +           A +TKE ASD AQA REKAQ+GKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMA-QHDDDVDKQSDPTTVYR
        VKSMAQGAA+AVKSTFGMA Q+DDDVDK +   T YR
Subjt:  VKSMAQGAADAVKSTFGMA-QHDDDVDKQSDPTTVYR

A0A6J1D7P2 late embryogenesis abundant protein Dc3-like4.9e-6299.27Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MA+HDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYRG
        VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYRG
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYRG

A0A6J1GPH8 late embryogenesis abundant protein 71.3e-3064.71Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q ++AGETKGRAEEKT+Q M TMG+KA    + T       ++ A+ESK+Q+GSY+S+K           AQAAREKAQSGKE TGGILEQTGEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYR
        VKSMAQGAADAVKSTFGMA HDDDV K+   TT YR
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYR

SwissProt top hitse value%identityAlignment
O49816 Late embryogenesis abundant protein 12.6e-2043.75Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK-------AQESKEQSGSYLSEKAQ--------------------------A
        MASHDQ ++AGET GR EEKTNQM+  + +KA+  K+K  +  + A+DK       A+E  +Q+     EK Q                          A
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK-------AQESKEQSGSYLSEKAQ--------------------------A

Query:  TKEKASDAAQAAREK-----------AQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDKQSDPT
        TKEKA D    AREK           AQSGK+ + G L+QTGEKVK MAQGA DAVK TFGMA  +DD DK   PT
Subjt:  TKEKASDAAQAAREK-----------AQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDKQSDPT

O49817 Late embryogenesis abundant protein 23.6e-2247.4Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEK-----------ARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREK-------
        M SHDQ +RAGE KGR EEKTNQM+  + +K           A+  KDKT +T +AA++K Q++ + +     +  QATKEKA D    A+EK       
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEK-----------ARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREK-------

Query:  ----AQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDKQSDPT
            AQSGK+ + G L+QTGEK K MAQGA DAVK TFGM   +DD DK   PT
Subjt:  ----AQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDKQSDPT

P13939 Late embryogenesis abundant protein D-76.2e-2250Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK
        MASH+Q ++AG  +GRA EK  QM ++M EKA   K KT ET  AA+ K  E+ E +       A+ T +K    A AAR KA+  KE +GGIL+Q GEK
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEK

Query:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYR
        V++ AQGA DAVK TFGMA  D D D+ + P TV R
Subjt:  VKSMAQGAADAVKSTFGMAQHDDDVDKQSDPTTVYR

P83442 Late embryogenesis abundant protein Dc33.0e-2449.66Show/hide
Query:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKA----------------------QATKEKASDAAQ
        MASH DQ ++AGE KG A+EKT QM DTM +KA+  KDK  E   +ARD+  ESK+Q+GSY+S+KA                      QATKEKAS+  +
Subjt:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKA----------------------QATKEKASDAAQ

Query:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDD
        +A+E A +GKE TGG++    E+VK MAQGA +AVK+TFGMA  D++
Subjt:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDD

Q96270 Late embryogenesis abundant protein 72.1e-2245.86Show/hide
Query:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK----------------------AQESKEQSGSYLSEKAQATKEKASDAAQ
        MASH +Q ++AGET+G+A+EKT + M TMG+K +  KDKT ET ++A+ K                      AQESK+++GSY+SE  +A K KA DAA+
Subjt:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK----------------------AQESKEQSGSYLSEKAQATKEKASDAAQ

Query:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK-QSDPTT
          +E A++GKE T GIL QTGE+VK MA GA DAVK T G+   + + +   S P+T
Subjt:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK-QSDPTT

Arabidopsis top hitse value%identityAlignment
AT1G52690.1 Late embryogenesis abundant protein (LEA) family protein1.5e-2345.86Show/hide
Query:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK----------------------AQESKEQSGSYLSEKAQATKEKASDAAQ
        MASH +Q ++AGET+G+A+EKT + M TMG+K +  KDKT ET ++A+ K                      AQESK+++GSY+SE  +A K KA DAA+
Subjt:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK----------------------AQESKEQSGSYLSEKAQATKEKASDAAQ

Query:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK-QSDPTT
          +E A++GKE T GIL QTGE+VK MA GA DAVK T G+   + + +   S P+T
Subjt:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK-QSDPTT

AT1G52690.2 Late embryogenesis abundant protein (LEA) family protein1.5e-2345.86Show/hide
Query:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK----------------------AQESKEQSGSYLSEKAQATKEKASDAAQ
        MASH +Q ++AGET+G+A+EKT + M TMG+K +  KDKT ET ++A+ K                      AQESK+++GSY+SE  +A K KA DAA+
Subjt:  MASH-DQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDK----------------------AQESKEQSGSYLSEKAQATKEKASDAAQ

Query:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK-QSDPTT
          +E A++GKE T GIL QTGE+VK MA GA DAVK T G+   + + +   S P+T
Subjt:  AAREKAQSGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK-QSDPTT

AT3G15670.1 Late embryogenesis abundant protein (LEA) family protein6.0e-2036.41Show/hide
Query:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAAR-----------------------------------------------------
        MAS+ Q ++AGET+G+A+EKT Q M TM +KA E +DKT +T + A+                                                     
Subjt:  MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAAR-----------------------------------------------------

Query:  ---------DKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQ-----------SGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK
                 DKA+E+K+++GSYLSE  +A K KA DAAQ  +E AQ           +G++ TGG L QTGE VK MA GAADAVK TFGMA  ++D + 
Subjt:  ---------DKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQ-----------SGKEATGGILEQTGEKVKSMAQGAADAVKSTFGMAQHDDDVDK

Query:  QSDPTT
            TT
Subjt:  QSDPTT

AT4G13560.1 Late embryogenesis abundant protein (LEA) family protein1.5e-1037.17Show/hide
Query:  QGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEKVKSMA
        Q F AG+ +G+A+EK  Q  ++  + A+   DKT +  ++ARDKA           ++  Q+ ++K +D + +A + AQ  +E   G+  QTGE VK+MA
Subjt:  QGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEKVKSMA

Query:  QGAADAVKSTFGM
        QGA D VK++ GM
Subjt:  QGAADAVKSTFGM

AT5G44310.1 Late embryogenesis abundant protein (LEA) family protein3.2e-0533.87Show/hide
Query:  RAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEKVKSMAQGA
        +A + K + ++   +  D + E A    DK YET   A+DKA + KE++  +    A+ TKEK ++ A  A +KA   KE T    EQT +KV   A  A
Subjt:  RAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEKVKSMAQGA

Query:  ADAVKSTFGMAQH--DDDVDKQSD
        AD  + T   A+   +D  +K  D
Subjt:  ADAVKSTFGMAQH--DDDVDKQSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCCATGATCAGGGCTTCAGAGCTGGCGAAACCAAGGGCCGAGCCGAGGAGAAGACGAATCAGATGATGGATACGATGGGGGAGAAGGCCCGAGAGACAAAGGA
CAAGACTTACGAGACTGGCCGGGCCGCGAGGGATAAGGCCCAGGAGTCGAAGGAGCAGTCCGGAAGCTATTTGTCGGAGAAGGCCCAGGCGACGAAGGAAAAGGCCTCGG
ACGCGGCCCAAGCGGCCCGAGAGAAGGCCCAATCTGGAAAAGAGGCGACCGGAGGGATTCTGGAGCAGACGGGTGAGAAGGTGAAGAGTATGGCCCAAGGAGCAGCGGAT
GCTGTGAAAAGCACTTTTGGTATGGCCCAGCACGATGATGACGTGGACAAACAGAGTGACCCCACCACTGTCTACCGGGGC
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCCATGATCAGGGCTTCAGAGCTGGCGAAACCAAGGGCCGAGCCGAGGAGAAGACGAATCAGATGATGGATACGATGGGGGAGAAGGCCCGAGAGACAAAGGA
CAAGACTTACGAGACTGGCCGGGCCGCGAGGGATAAGGCCCAGGAGTCGAAGGAGCAGTCCGGAAGCTATTTGTCGGAGAAGGCCCAGGCGACGAAGGAAAAGGCCTCGG
ACGCGGCCCAAGCGGCCCGAGAGAAGGCCCAATCTGGAAAAGAGGCGACCGGAGGGATTCTGGAGCAGACGGGTGAGAAGGTGAAGAGTATGGCCCAAGGAGCAGCGGAT
GCTGTGAAAAGCACTTTTGGTATGGCCCAGCACGATGATGACGTGGACAAACAGAGTGACCCCACCACTGTCTACCGGGGC
Protein sequenceShow/hide protein sequence
MASHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSYLSEKAQATKEKASDAAQAAREKAQSGKEATGGILEQTGEKVKSMAQGAAD
AVKSTFGMAQHDDDVDKQSDPTTVYRG