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MS009449 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009449
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionneurogenic locus notch homolog protein 3-like
Genome locationscaffold813:1369638..1369778
RNA-Seq ExpressionMS009449
SyntenyMS009449
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145504.1 uncharacterized protein LOC111014937 isoform X1 [Momordica charantia]5.6e-20100Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
        VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
XP_022145513.1 uncharacterized protein LOC111014937 isoform X2 [Momordica charantia]5.6e-20100Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
        VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
XP_035548234.1 neurogenic locus notch homolog protein 3-like [Juglans regia]2.1e-1472.92Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
        VC++INCG+GTCKASNAS LGFDCECN GW+++Q+G  TFP CV+PNC
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
XP_038899645.1 uncharacterized protein LOC120086904 [Benincasa hispida]3.8e-1689.36Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPN
        VCSVINCGQGTCKASNASFLGFDCECN GWR+ QIG FTFP CVLPN
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPN
XP_041019136.1 delta and Notch-like epidermal growth factor-related receptor [Juglans microcarpa x Juglans regia]2.7e-1472.92Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
        VC++INCG+GTCKASNAS LGFDCECN GW+++Q+G  TFP CV+PNC
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
TrEMBL top hitse value%identityAlignment
A0A1R3G7X8 Uncharacterized protein (Fragment)2.5e-1368.75Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
        VCS I CG+G+CKASN S LGF+CECN GW+++QIG FTFP C++PNC
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
A0A6J1CVF7 uncharacterized protein LOC111014937 isoform X12.7e-20100Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
        VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
A0A6J1CW51 uncharacterized protein LOC111014937 isoform X22.7e-20100Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
        VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPN
A0A6P3YZ54 neurogenic locus notch homolog protein 3-like2.9e-1475Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
        VC+ INCGQGTCKASNAS LGFDCEC  GW+++QIG  TFP C+LPNC
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
A0A6P9EL29 neurogenic locus notch homolog protein 3-like1.0e-1472.92Show/hide
Query:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
        VC++INCG+GTCKASNAS LGFDCECN GW+++Q+G  TFP CV+PNC
Subjt:  VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFP-CVLPNC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G14746.1 CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).8.9e-0841.67Show/hide
Query:  VCSVINCGQGTCKA-SNASFLGFDCECNSGWRRLQIGSFTFPCVLPNC
        +C  + CG+G CKA SN +F+ ++CEC  GW++        PC+ PNC
Subjt:  VCSVINCGQGTCKA-SNASFLGFDCECNSGWRRLQIGSFTFPCVLPNC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTGCTCAGTCATAAATTGTGGGCAAGGAACTTGCAAGGCATCTAATGCTTCATTTCTTGGTTTCGATTGTGAATGCAATTCTGGTTGGAGGAGACTCCAGATTGGTTC
GTTCACCTTTCCTTGTGTTCTTCCCAACTGT
mRNA sequenceShow/hide mRNA sequence
GTGTGCTCAGTCATAAATTGTGGGCAAGGAACTTGCAAGGCATCTAATGCTTCATTTCTTGGTTTCGATTGTGAATGCAATTCTGGTTGGAGGAGACTCCAGATTGGTTC
GTTCACCTTTCCTTGTGTTCTTCCCAACTGT
Protein sequenceShow/hide protein sequence
VCSVINCGQGTCKASNASFLGFDCECNSGWRRLQIGSFTFPCVLPNC