; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009491 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009491
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationscaffold813:1690026..1690514
RNA-Seq ExpressionMS009491
SyntenyMS009491
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059310.1 30S ribosomal protein S17 [Cucumis melo var. makuwa]2.4e-6285.35Show/hide
Query:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
        SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSK  SSPSP  +QTPNFLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
Subjt:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD

Query:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL
        NQFKVGD VELEKCRPISK KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Subjt:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL

XP_004141765.1 30S ribosomal protein S17, chloroplastic [Cucumis sativus]1.1e-6282.72Show/hide
Query:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        +++  SSLLQIPP++SLKKLSIS+ FLHGSTPLS LSKP SS SP P+QTPNFLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL
        AHDPDNQF+VGD VELEKCRPISK KTFLAIPVP RNSK KA E    GELGIPLESQQ+Q+
Subjt:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL

XP_008462167.1 PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo]2.9e-6385.99Show/hide
Query:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
        SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSKP SSPSP  +QTPNFLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
Subjt:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD

Query:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL
        NQFKVGD VELEKCRPISK KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Subjt:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL

XP_022150198.1 30S ribosomal protein S17, chloroplastic [Momordica charantia]1.7e-7999.38Show/hide
Query:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        MSVIPSSLL IPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL
        AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL
Subjt:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]1.9e-6285.16Show/hide
Query:  PSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDP
        PSS LQIPPL+ LK LS+ST FLHGS PLS LSKP  SPS S +QTPNFLPSI+AM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDP
Subjt:  PSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDP

Query:  DNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ
        DN+FKVGD VELEKCRPISK KTFLAIPVP RNSKPKA EA  GELGIPLESQQQ
Subjt:  DNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0K952 Uncharacterized protein5.3e-6382.72Show/hide
Query:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        +++  SSLLQIPP++SLKKLSIS+ FLHGSTPLS LSKP SS SP P+QTPNFLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL
        AHDPDNQF+VGD VELEKCRPISK KTFLAIPVP RNSK KA E    GELGIPLESQQ+Q+
Subjt:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL

A0A1S3CGC8 30S ribosomal protein S17, chloroplastic1.4e-6385.99Show/hide
Query:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
        SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSKP SSPSP  +QTPNFLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
Subjt:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD

Query:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL
        NQFKVGD VELEKCRPISK KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Subjt:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL

A0A5A7UW29 30S ribosomal protein S17, chloroplastic1.2e-6285.35Show/hide
Query:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
        SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSK  SSPSP  +QTPNFLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
Subjt:  SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD

Query:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL
        NQFKVGD VELEKCRPISK KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Subjt:  NQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL

A0A6J1D8T2 30S ribosomal protein S17, chloroplastic8.1e-8099.38Show/hide
Query:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        MSVIPSSLL IPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL
        AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL
Subjt:  AHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL

A0A6J1GQP3 30S ribosomal protein S17, chloroplastic-like1.5e-6285.16Show/hide
Query:  PSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDP
        PSS LQIPPL+ LK LSIST FLHGS PLS LSKP  SPS S +QTPNFLPSI+AM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDP
Subjt:  PSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDP

Query:  DNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ
        DN+FKVGD VELEKCRPISK KTFLAIPVP RNSKPKA EA  GELGIPLESQ+Q
Subjt:  DNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic4.8e-4569.93Show/hide
Query:  SLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVE
        SL+ L +S+PF HGSTPLS LSKP S P+    + P  +P IRAMK++QGRVVCATSDKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGDVV 
Subjt:  SLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVE

Query:  LEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQ
        LEK RPISKTK+F+A+PV  R ++ KA       LG+PLESQQ
Subjt:  LEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)1.5e-3562.99Show/hide
Query:  LSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIP
        L+  S P SSP           P+I+AMK+++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD+V+L K RPISK KTFLA+P
Subjt:  LSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIP

Query:  VPPRNSKPKAGEAAPGELGIPLESQQQ
         P R SK KAG +  GELGIPL+SQQ+
Subjt:  VPPRNSKPKAGEAAPGELGIPLESQQQ

P82137 30S ribosomal protein S17, chloroplastic1.8e-3963.92Show/hide
Query:  SLLQIPPLKSLKKLSISTPFLHG-STPLSLL---SKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        SLL+ PPL S    S   PFLHG +T LSLL   S    S SP  + T    P I+AM+S+QG+V+CAT+DKTV VEVVRLAPHPKYKRR+R KKKYQAH
Subjt:  SLLQIPPLKSLKKLSISTPFLHG-STPLSLL---SKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNS---KPKAGEAAPGELGIPLESQ
        DPDNQFKVGD V+L+KCRPISKTKTFLA+    R S   +PK  +AA  ELGIPLESQ
Subjt:  DPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNS---KPKAGEAAPGELGIPLESQ

Q9TJN6 30S ribosomal protein S17, chloroplastic1.5e-3060.77Show/hide
Query:  LLSKP--PSSPSPSPAQTPNFLPSIR--AMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLA
        LLS P    SP P P  +    P++R  A + L GRVV   +DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGDVVEL+  RPISKTK FLA
Subjt:  LLSKP--PSSPSPSPAQTPNFLPSIR--AMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLA

Query:  IPVPPRNSKPKAGEAAPGELGIPLESQQQQ
        IP+PPR+++ K+      +L  PL+S   Q
Subjt:  IPVPPRNSKPKAGEAAPGELGIPLESQQQQ

Q9ZST1 30S ribosomal protein S17, chloroplastic5.7e-3057.25Show/hide
Query:  ISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRP
        ++TPF+  S+P+ +     S  SP           I+A K L GRVV   +DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGDVVEL + RP
Subjt:  ISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRP

Query:  ISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ
        ISKTK FLA+P+PPR+++ K+      +L  PL+SQ Q
Subjt:  ISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S173.4e-4669.93Show/hide
Query:  SLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVE
        SL+ L +S+PF HGSTPLS LSKP S P+    + P  +P IRAMK++QGRVVCATSDKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGDVV 
Subjt:  SLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVE

Query:  LEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQ
        LEK RPISKTK+F+A+PV  R ++ KA       LG+PLESQQ
Subjt:  LEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAGAAATGTCCGTCATTCCCTCGTCGCTTCTGCAAATTCCTCCATTGAAGAGCCTCAAGAAGCTCTCGATTTCCACCCCTTTCCTCCATGGCTCCACCCCTCTCTCGCT
CCTCTCTAAGCCACCCTCTTCTCCGTCCCCATCTCCCGCTCAAACCCCTAATTTCCTCCCCTCCATTAGGGCCATGAAGTCCCTCCAGGGCCGCGTCGTCTGCGCCACCA
GCGACAAGACCGTCGCCGTCGAGGTCGTCCGATTGGCGCCTCATCCAAAGTACAAGCGCCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTC
AAGGTCGGAGACGTCGTCGAGCTTGAGAAATGTCGCCCCATTAGCAAGACCAAGACGTTTCTGGCCATTCCGGTTCCGCCGAGAAATTCCAAGCCCAAAGCAGGGGAAGC
TGCGCCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAGCAACAGCTT
mRNA sequenceShow/hide mRNA sequence
GCAGAAATGTCCGTCATTCCCTCGTCGCTTCTGCAAATTCCTCCATTGAAGAGCCTCAAGAAGCTCTCGATTTCCACCCCTTTCCTCCATGGCTCCACCCCTCTCTCGCT
CCTCTCTAAGCCACCCTCTTCTCCGTCCCCATCTCCCGCTCAAACCCCTAATTTCCTCCCCTCCATTAGGGCCATGAAGTCCCTCCAGGGCCGCGTCGTCTGCGCCACCA
GCGACAAGACCGTCGCCGTCGAGGTCGTCCGATTGGCGCCTCATCCAAAGTACAAGCGCCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTC
AAGGTCGGAGACGTCGTCGAGCTTGAGAAATGTCGCCCCATTAGCAAGACCAAGACGTTTCTGGCCATTCCGGTTCCGCCGAGAAATTCCAAGCCCAAAGCAGGGGAAGC
TGCGCCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAGCAACAGCTT
Protein sequenceShow/hide protein sequence
AEMSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF
KVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL