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MS009493 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009493
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein CURVATURE THYLAKOID 1C, chloroplastic
Genome locationscaffold813:1713981..1715869
RNA-Seq ExpressionMS009493
SyntenyMS009493
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR025564 - Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain
IPR033344 - Protein CURVATURE THYLAKOID 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593469.1 Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia]4.5e-3979.31Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQ-KLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKL
        MASI A+LPPPLLAPGKSFT L T Q KLTVFPIAK RSA  +VKA GDSS+SS S+ IIKSV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKL
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQ-KLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKL

Query:  PLLPGLLEFIGALVSW
        PLLPG+LEFIG LVSW
Subjt:  PLLPGLLEFIGALVSW

XP_004141763.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis sativus]2.0e-3979.13Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP
        MASIVA+LPPPLLAP KSFT+LN SQKL+VF  A  RS  VVVKA G SS+SS SL I+KSV+N+WDQPEDRL LFGLGFAAVA  WTATN VTAIDKLP
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP

Query:  LLPGLLEFIGALVSW
        LLPG+LEFIGALVSW
Subjt:  LLPGLLEFIGALVSW

XP_022144822.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia]2.5e-53100Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPL
        MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPL
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPL

Query:  LPGLLEFIGALVSW
        LPGLLEFIGALVSW
Subjt:  LPGLLEFIGALVSW

XP_023000405.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima]1.2e-3978.26Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP
        MASI A+LPPPLLAPGKSF  L T QK+TVFPIAK RSA  +VKA GDSS+SS S+ IIKSV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKLP
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP

Query:  LLPGLLEFIGALVSW
        LLPG+LEFIG LVSW
Subjt:  LLPGLLEFIGALVSW

XP_038897597.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida]8.7e-4383.48Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP
        MASIVA+LPPPLLAP KSFTLLNTSQKLT FPIA +RS  VVVKA G SS+SS SL IIKSV+N+WDQPEDRL LFGLGFAAVA +WTATN VTAIDKLP
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP

Query:  LLPGLLEFIGALVSW
        LLPG+LEFIGALVSW
Subjt:  LLPGLLEFIGALVSW

TrEMBL top hitse value%identityAlignment
A0A0A0KC66 CAAD domain-containing protein9.8e-4079.13Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP
        MASIVA+LPPPLLAP KSFT+LN SQKL+VF  A  RS  VVVKA G SS+SS SL I+KSV+N+WDQPEDRL LFGLGFAAVA  WTATN VTAIDKLP
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP

Query:  LLPGLLEFIGALVSW
        LLPG+LEFIGALVSW
Subjt:  LLPGLLEFIGALVSW

A0A5D3BWY3 Protein CURVATURE THYLAKOID 1C8.3e-3978.26Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP
        MASIVA+LPPPLLAP KSFT+LN SQKL+V   AK R   VVVKA G SS+SS SL IIKSV+N+WDQPEDR  LFGLGFAAVA  WTATN VTAIDKLP
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP

Query:  LLPGLLEFIGALVSW
        LLPG+LEFIGALVSW
Subjt:  LLPGLLEFIGALVSW

A0A6J1CUT1 protein CURVATURE THYLAKOID 1C, chloroplastic1.2e-53100Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPL
        MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPL
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPL

Query:  LPGLLEFIGALVSW
        LPGLLEFIGALVSW
Subjt:  LPGLLEFIGALVSW

A0A6J1HLG0 protein CURVATURE THYLAKOID 1C, chloroplastic2.2e-3979.31Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQ-KLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKL
        MASI A+LPPPLLAPGKSFT L T Q KLTVFPIAK RSA  +VKA GDSS+SS S+ IIKSV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKL
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQ-KLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKL

Query:  PLLPGLLEFIGALVSW
        PLLPG+LEFIG LVSW
Subjt:  PLLPGLLEFIGALVSW

A0A6J1KFS9 protein CURVATURE THYLAKOID 1C, chloroplastic5.7e-4078.26Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP
        MASI A+LPPPLLAPGKSF  L T QK+TVFPIAK RSA  +VKA GDSS+SS S+ IIKSV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKLP
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLP

Query:  LLPGLLEFIGALVSW
        LLPG+LEFIG LVSW
Subjt:  LLPGLLEFIGALVSW

SwissProt top hitse value%identityAlignment
Q8LCA1 Protein CURVATURE THYLAKOID 1B, chloroplastic5.6e-0830.25Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS----------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATN
        +AS  AS P  +  P         + K T +   +K    VV +AT +  ++ + +          I+K+ Q  W++ +D+  +  L FA V ALW +  
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS----------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATN

Query:  FVTAIDKLPLLPGLLEFIG
         ++AID+LPL+PG+LE +G
Subjt:  FVTAIDKLPLLPGLLEFIG

Q9M812 Protein CURVATURE THYLAKOID 1C, chloroplastic2.4e-1943.2Show/hide
Query:  MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDSSDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTA
        MASI A+LP PLL   +           F+L   +  L+   + +  S+ +++VKA+G+SSDSS+ L ++ ++QN+WD+ EDRLGL GLGFA + ALW +
Subjt:  MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDSSDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTA

Query:  TNFVTAIDKLPLLPGLLEFIGALVS
         N +TAIDKLP++    E +G L S
Subjt:  TNFVTAIDKLPLLPGLLEFIGALVS

Arabidopsis top hitse value%identityAlignment
AT1G52220.1 FUNCTIONS IN: molecular_function unknown1.7e-2043.2Show/hide
Query:  MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDSSDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTA
        MASI A+LP PLL   +           F+L   +  L+   + +  S+ +++VKA+G+SSDSS+ L ++ ++QN+WD+ EDRLGL GLGFA + ALW +
Subjt:  MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDSSDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTA

Query:  TNFVTAIDKLPLLPGLLEFIGALVS
         N +TAIDKLP++    E +G L S
Subjt:  TNFVTAIDKLPLLPGLLEFIGALVS

AT1G52220.2 FUNCTIONS IN: molecular_function unknown9.4e-1943.2Show/hide
Query:  MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDSSDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTA
        MASI A+LP PLL   +           F+L   +  L+   + +  S+ +++VKA+G+SSDSS+ L ++ ++QN WD+ EDRLGL GLGFA + ALW +
Subjt:  MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDSSDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTA

Query:  TNFVTAIDKLPLLPGLLEFIGALVS
         N +TAIDKLP++    E +G L S
Subjt:  TNFVTAIDKLPLLPGLLEFIGALVS

AT2G46820.1 photosystem I P subunit4.0e-0930.25Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS----------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATN
        +AS  AS P  +  P         + K T +   +K    VV +AT +  ++ + +          I+K+ Q  W++ +D+  +  L FA V ALW +  
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS----------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATN

Query:  FVTAIDKLPLLPGLLEFIG
         ++AID+LPL+PG+LE +G
Subjt:  FVTAIDKLPLLPGLLEFIG

AT2G46820.2 photosystem I P subunit4.0e-0930.25Show/hide
Query:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS----------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATN
        +AS  AS P  +  P         + K T +   +K    VV +AT +  ++ + +          I+K+ Q  W++ +D+  +  L FA V ALW +  
Subjt:  MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS----------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATN

Query:  FVTAIDKLPLLPGLLEFIG
         ++AID+LPL+PG+LE +G
Subjt:  FVTAIDKLPLLPGLLEFIG

AT4G01150.1 unknown protein5.0e-0429.58Show/hide
Query:  VVKATGDSSDSSSL---SIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIG
        ++K    S ++SS+    +I  ++  WD  E++  +   G  A+ A+W ++  V AI+ +PLLP ++E +G
Subjt:  VVKATGDSSDSSSL---SIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTGTTGCTAGTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCTCAGAAGCTCACTGTTTTTCCCATCGCAAAGAAACG
TTCTGCGACTGTTGTTGTAAAGGCTACTGGAGACAGCTCCGATTCTTCTTCCCTTAGTATTATTAAGTCTGTTCAAAATATTTGGGATCAACCTGAAGATAGGCTGGGAC
TTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTTTATGGACAGCAACAAACTTTGTTACGGCTATTGACAAGCTGCCACTGCTTCCAGGTTTATTAGAATTCATAGGAGCA
CTGGTTTCTTGG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATTGTTGCTAGTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCTCAGAAGCTCACTGTTTTTCCCATCGCAAAGAAACG
TTCTGCGACTGTTGTTGTAAAGGCTACTGGAGACAGCTCCGATTCTTCTTCCCTTAGTATTATTAAGTCTGTTCAAAATATTTGGGATCAACCTGAAGATAGGCTGGGAC
TTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTTTATGGACAGCAACAAACTTTGTTACGGCTATTGACAAGCTGCCACTGCTTCCAGGTTTATTAGAATTCATAGGAGCA
CTGGTTTCTTGG
Protein sequenceShow/hide protein sequence
MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGA
LVSW