; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009535 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009535
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC7-like isoform X1
Genome locationscaffold813:1995685..1996863
RNA-Seq ExpressionMS009535
SyntenyMS009535
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR024661 - DNA-directed RNA polymerase III, subunit Rpc31


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154143.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia]2.2e-8299.42Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

XP_023548752.1 DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo]6.5e-7489.53Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLP+VSD+PE KGLVICNSRLLNYWKASPF+LEENV+KKMQRTEIE+FSDR+K NSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR+KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGL KLDFLEKREESLKGQ+KDDKEKKEGE  EDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

XP_038898860.1 glutamic acid-rich protein-like isoform X1 [Benincasa hispida]8.5e-7489.53Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        QNVTLP VSD+PEEK L I N++ LNYWKASPF+LEENV+KKMQRTE+EKFSDRSK NSTLKRDSLAQILQLTSRNFPEELV+GFKGKLR KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

XP_038898864.1 glutamic acid-rich protein-like isoform X2 [Benincasa hispida]1.9e-7388.95Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLP VSD+PEEK L I N++ LNYWKASPF+LEENV+KKMQRTE+EKFSDRSK NSTLKRDSLAQILQLTSRNFPEELV+GFKGKLR KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

XP_038898866.1 glutamic acid-rich protein-like isoform X3 [Benincasa hispida]8.5e-7489.53Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        QNVTLP VSD+PEEK L I N++ LNYWKASPF+LEENV+KKMQRTE+EKFSDRSK NSTLKRDSLAQILQLTSRNFPEELV+GFKGKLR KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDE++EEDDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

TrEMBL top hitse value%identityAlignment
A0A1S3CGV4 DNA-directed RNA polymerase III subunit3.0e-6984.3Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLPSVS++PEE  L +     L YWKASPF+LEENV+KKMQRTEIEKFSDR K+NSTLKRDSLAQI+QLTSRNFPEELVEGFKGKLR KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGL+K+DFLEKREESLKGQDK+DKEKKEGEEGEDE++EE+DAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

A0A5D3BVU1 DNA-directed RNA polymerase III subunit RPC7-like isoform X13.0e-6984.3Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLPSVS++PEE  L +     L YWKASPF+LEENV+KKMQRTEIEKFSDR K+NSTLKRDSLAQI+QLTSRNFPEELVEGFKGKLR KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGL+K+DFLEKREESLKGQDK+DKEKKEGEEGEDE++EE+DAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

A0A6J1DMV9 ribosomal L1 domain-containing protein CG13096-like1.1e-8299.42Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

A0A6J1GNY2 glutamic acid-rich protein-like1.6e-7388.37Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLP+VSD+PE KGLVICNSRLLNYWKASPF+LEENV+KKMQ+TEIE+FSDR+K NSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR+KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGL KLDFLEKREESLKGQ+KDDKEKKEGE  EDE++E+DDAQSEELTDDDYYQNEYFDDDEDDYNME++GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

A0A6J1JVL5 DNA-directed RNA polymerase III subunit rpc31-like3.5e-7388.37Show/hide
Query:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +NVTLP+VSD+PE KGLVICNSRLLNYWKASPF+LEENV+KKMQ+ EIE+FSDR+K NSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR+KRKVQWNPE
Subjt:  QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        SGL KLDFLEKREESLKGQ+KDDKEKKEGE  EDE++EED+AQSEELTDDDYYQNEYFDDDEDDYNMED+GG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G01590.1 unknown protein3.6e-1436.99Show/hide
Query:  VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWN
        +TLP    +  +  LV        +W+ SP+ L +  + K ++    IE++SD  + K+ S  K  S    L L   NFP+EL+   + + R  ++ +W+
Subjt:  VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWN

Query:  PESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG
         E+ LQKLD  EK E   K + K++K     EEGED+E E  +++ EE  + DY QN+ FDDD+DDYN EDDG
Subjt:  PESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG

AT4G01590.2 unknown protein3.6e-1436.99Show/hide
Query:  VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWN
        +TLP    +  +  LV        +W+ SP+ L +  + K ++    IE++SD  + K+ S  K  S    L L   NFP+EL+   + + R  ++ +W+
Subjt:  VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWN

Query:  PESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG
         E+ LQKLD  EK E   K + K++K     EEGED+E E  +++ EE  + DY QN+ FDDD+DDYN EDDG
Subjt:  PESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG

AT4G01590.3 unknown protein3.6e-1436.99Show/hide
Query:  VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWN
        +TLP    +  +  LV        +W+ SP+ L +  + K ++    IE++SD  + K+ S  K  S    L L   NFP+EL+   + + R  ++ +W+
Subjt:  VTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQR--TEIEKFSD--RSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWN

Query:  PESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG
         E+ LQKLD  EK E   K + K++K     EEGED+E E  +++ EE  + DY QN+ FDDD+DDYN EDDG
Subjt:  PESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDG

AT4G35680.1 Arabidopsis protein of unknown function (DUF241)4.6e-0931.98Show/hide
Query:  VTLPSVSDVPEEKGLVICNSRLL--NYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE
        +TLP    +  +  LV+  S      +W  SP+ L +  + K ++  ++           ++R            NF +ELV   + + R  ++ +W+ E
Subjt:  VTLPSVSDVPEEKGLVICNSRLL--NYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPE

Query:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG
        + LQKLD  EK E   K Q  ++K     E+GED+E +  +++ EE  + DY QN+ FDDDEDDYN E+DGG
Subjt:  SGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGAATGTAACCCTACCCAGCGTTAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAGGTTGCTGAATTATTGGAAGGCCTCTCCCTTTTTCCTAGAGGA
GAATGTCTTGAAAAAGATGCAAAGAACCGAGATAGAGAAGTTTTCTGATAGATCCAAGTTAAATAGTACATTGAAGCGTGATTCCCTCGCACAAATTCTACAGCTCACAT
CTAGGAACTTCCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGGCTGCAAAAATTGGACTTTCTCGAG
AAGCGCGAAGAATCTCTCAAGGGGCAGGACAAGGATGACAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGAAGACGAAGAGGACGATGCACAGTCTGAGGAACT
TACCGATGATGATTATTATCAGAACGAATACTTCGACGATGACGAAGACGATTACAACATGGAAGACGATGGTGGA
mRNA sequenceShow/hide mRNA sequence
CAGAATGTAACCCTACCCAGCGTTAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAGGTTGCTGAATTATTGGAAGGCCTCTCCCTTTTTCCTAGAGGA
GAATGTCTTGAAAAAGATGCAAAGAACCGAGATAGAGAAGTTTTCTGATAGATCCAAGTTAAATAGTACATTGAAGCGTGATTCCCTCGCACAAATTCTACAGCTCACAT
CTAGGAACTTCCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGGCTGCAAAAATTGGACTTTCTCGAG
AAGCGCGAAGAATCTCTCAAGGGGCAGGACAAGGATGACAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGAAGACGAAGAGGACGATGCACAGTCTGAGGAACT
TACCGATGATGATTATTATCAGAACGAATACTTCGACGATGACGAAGACGATTACAACATGGAAGACGATGGTGGA
Protein sequenceShow/hide protein sequence
QNVTLPSVSDVPEEKGLVICNSRLLNYWKASPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLE
KREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGG