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MS009548 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009548
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L28-2 isoform B
Genome locationscaffold813:2187164..2187412
RNA-Seq ExpressionMS009548
SyntenyMS009548
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059447.1 hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa]1.4e-2989.16Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR
        MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PELPMERGKSLKEM+SEKLKTGI+KWAKAVVAYAR VSDR GS RR
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR

KAG6575488.1 hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia]4.4e-2886.59Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR
        MSVKKS SLTKAE+AKRP RH+AARKRRRSFDLCFSSPELPME GKSLKEMDSEKLK  IRKWAKAVVAYAR VS+R GS R
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR

KAG6593505.1 hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia]3.3e-3189.16Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR
        MSVKKSLSLTKAE+AKR  RH+AARKRRRSFDLCFSSP+L MERGKSLKEMDSEKLK+GIRKWAK+VVAYARQVSDR GSWRR
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR

KGN45542.1 hypothetical protein Csa_016865 [Cucumis sativus]2.3e-2987.95Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR
        MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PE+PMERGKSLKEM+SEKLKTGI+KWAKAVVAYAR VSDR GS RR
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR

PON96105.1 hypothetical protein TorRG33x02_080350 [Trema orientale]1.8e-1362.2Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR
        MSVKK+LSL + E AK    H+ +  RR  +  CFS  ELPMERGK+LKEMDS KLK  I++WAKAVVAYARQVS R G  R
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR

TrEMBL top hitse value%identityAlignment
A0A0A0KB03 Uncharacterized protein1.1e-2987.95Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR
        MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PE+PMERGKSLKEM+SEKLKTGI+KWAKAVVAYAR VSDR GS RR
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR

A0A2P5FE88 Uncharacterized protein8.7e-1462.2Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR
        MSVKK+LSL + E AK    H+ +  RR  +  CFS  ELPMERGK+LKEMDS KLK  I++WAKAVVAYARQVS R G  R
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR

A0A498IZM5 Uncharacterized protein3.3e-1362.03Show/hide
Query:  KKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR
        +K+LSL   E  K      AA++ R  FD CFS  E+  E GKSLKEMDSEKLK+GI++WAKAVVAYARQVSDR GS R
Subjt:  KKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR

A0A540KWP0 Uncharacterized protein3.3e-1362.03Show/hide
Query:  KKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR
        +K+LSL   E  K      AA++ R  FD CFS  E+  E GKSLKEMDSEKLK+GI++WAKAVVAYARQVSDR GS R
Subjt:  KKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWR

A0A5A7UXU0 Uncharacterized protein6.7e-3089.16Show/hide
Query:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR
        MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PELPMERGKSLKEM+SEKLKTGI+KWAKAVVAYAR VSDR GS RR
Subjt:  MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAAGCTGAGGACGCGAAGCGCCCCAGAAGGCATGAAGCTGCCAGAAAGCGCAGAAGATCTTTCGATCTCTGTTTTTCATC
CCCAGAACTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGGATCCGGAAATGGGCTAAAGCCGTGGTGGCTTATGCTCGCCAAG
TAAGCGACCGCCTTGGAAGCTGGCGTCGC
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAAGCTGAGGACGCGAAGCGCCCCAGAAGGCATGAAGCTGCCAGAAAGCGCAGAAGATCTTTCGATCTCTGTTTTTCATC
CCCAGAACTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGGATCCGGAAATGGGCTAAAGCCGTGGTGGCTTATGCTCGCCAAG
TAAGCGACCGCCTTGGAAGCTGGCGTCGC
Protein sequenceShow/hide protein sequence
MSVKKSLSLTKAEDAKRPRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR