; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009557 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009557
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein WHI4
Genome locationscaffold813:2270132..2273456
RNA-Seq ExpressionMS009557
SyntenyMS009557
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148393.1 uncharacterized protein LOC111017052 isoform X1 [Momordica charantia]1.7e-14299.61Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

XP_022148402.1 uncharacterized protein LOC111017052 isoform X2 [Momordica charantia]1.2e-14099.21Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTER SEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

XP_022964622.1 protein WHI4 [Cucurbita moschata]1.3e-13493.7Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

XP_023000385.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]5.0e-13493.7Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]5.9e-13594.09Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

TrEMBL top hitse value%identityAlignment
A0A5A7V0X3 Protein WHI41.7e-13291.34Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK+D N+QETSSDDGGSEPDEPSKK ++S+EAV+TP++A+S PYEHHEK DGG CSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
         KYPGFNVLKLRAKSGMPVAFADFE++EQA KVMEELQGS+LPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

A0A6J1D3Z3 uncharacterized protein LOC111017052 isoform X18.3e-14399.61Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

A0A6J1D4Z1 uncharacterized protein LOC111017052 isoform X25.9e-14199.21Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTER SEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

A0A6J1HI97 protein WHI46.3e-13593.7Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 22.4e-13493.7Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEY
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a5.9e-1338.95Show/hide
Query:  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q6ZRY4 RNA-binding protein with multiple splicing 22.9e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q8VC52 RNA-binding protein with multiple splicing 22.9e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 21.3e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 22.7e-1340.66Show/hide
Query:  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N +    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-3535.83Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   +    +P+ +  +       P           C TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRG
        EL +V S+  GF  LK++   G PVAF DF++V  + + +  LQG++L SS  G
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRG

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.7e-3635.45Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   +    +P+ +  +       P           C TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYLYINYISI
        EL +V S+  GF  LK++   G PVAF DF++V  + + +  LQG++L SS  G    E L + Y S+
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYLYINYISI

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-3535.83Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   +    +P+ +  +       P           C TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRG
        EL +V S+  GF  LK++   G PVAF DF++V  + + +  LQG++L SS  G
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRG

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-8157Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALS
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R K    +Q+  SD+G S+PDE         P +     SEA   P +   
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALS

Query:  VPYEHHEK-TDGGH----CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIE
            H EK ++GG     CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEE+EQA   M  LQG++L SSDRGGMHIE
Subjt:  VPYEHHEK-TDGGH----CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-8560.87Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALSVPYEHHEK-TDGGH----
        Q+GS LHIELARSNSRRK +PG G YVVID R K    +Q+  SD+G S+PDE         P +     SEA   P +       H EK ++GG     
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALSVPYEHHEK-TDGGH----

Query:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY
        CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEE+EQA   M  LQG++L SSDRGGMHIEY
Subjt:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACACCAGCCCTACGATCCTTACTATCTTTACCATCAACCAGATCCGAACTACAGTGACCGGAGCAATATCAACACGCTCTTCATCTCCGGTCTCCCAGACGACGT
CAAGGCGCGCGAGATACACAACCTTTTCCGCCGCCGGCCTGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACA
ATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCCAGGTCAAATTCTAGGAGAAAA
CATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAGTCAGATATCAATGCCCAAGAAACATCAAGTGATGATGGTGGCAGTGAACCTGATGAACCATC
AAAGAAGACCGAACGAAGCAGCGAGGCTGTGATGACTCCTAGTAATGCTTTATCTGTTCCATATGAGCATCATGAAAAAACTGATGGAGGACACTGCTCCACTTTGTTTA
TCGCAAATCTGGGTCCAAACTGCAACGAAGATGAATTGAAGGAAGTCTTGTCCAAATATCCTGGGTTCAACGTGCTAAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCA
TTTGCTGATTTTGAGGAAGTTGAACAAGCTAGGAAGGTCATGGAGGAGCTTCAGGGCAGCATGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATTTATATAT
AAATTACATATCAATT
mRNA sequenceShow/hide mRNA sequence
ATGGCACACCAGCCCTACGATCCTTACTATCTTTACCATCAACCAGATCCGAACTACAGTGACCGGAGCAATATCAACACGCTCTTCATCTCCGGTCTCCCAGACGACGT
CAAGGCGCGCGAGATACACAACCTTTTCCGCCGCCGGCCTGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACA
ATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCCAGGTCAAATTCTAGGAGAAAA
CATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAGTCAGATATCAATGCCCAAGAAACATCAAGTGATGATGGTGGCAGTGAACCTGATGAACCATC
AAAGAAGACCGAACGAAGCAGCGAGGCTGTGATGACTCCTAGTAATGCTTTATCTGTTCCATATGAGCATCATGAAAAAACTGATGGAGGACACTGCTCCACTTTGTTTA
TCGCAAATCTGGGTCCAAACTGCAACGAAGATGAATTGAAGGAAGTCTTGTCCAAATATCCTGGGTTCAACGTGCTAAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCA
TTTGCTGATTTTGAGGAAGTTGAACAAGCTAGGAAGGTCATGGAGGAGCTTCAGGGCAGCATGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATTTATATAT
AAATTACATATCAATT
Protein sequenceShow/hide protein sequence
MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRK
HKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVA
FADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYLYINYISI