CuGenDBv2

Gene ID	MS009568
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Genome location	scaffold813:2351105..2351276
RNA-Seq Expression	MS009568
Synteny	MS009568
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR008991 - Translation protein SH3-like domain superfamily IPR014722 - Ribosomal protein L2, domain 2 IPR022669 - Ribosomal protein L2, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

AXU40408.1 ribosomal protein L2 [Gomphogyne cissiformis var. villosa]

1.1e-14

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

QNH92113.1 ribosomal protein L2 [Senna bicapsularis]

1.1e-14

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

RZC71849.1 hypothetical protein C5167_035027 [Papaver somniferum]

5.0e-15

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AGV+ KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

YP_009769300.1 ribosomal protein L2 [Senna bicapsularis]

1.1e-14

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

YP_009771865.1 ribosomal protein L2 [Baphia racemosa]

1.1e-14

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

TrEMBL top hits

e value

%identity

Alignment

A0A4Y7KIS3 Ribosomal_L2_C domain-containing protein

2.4e-15

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AGV+ KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

A0A6H0EDN7 Ribosomal protein L2

5.4e-15

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

A0A6H0EKW4 Ribosomal protein L2

5.4e-15

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

A0A7G7YC93 50S ribosomal protein L2, chloroplastic

5.4e-15

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

A0A7G7YFA3 50S ribosomal protein L2, chloroplastic

5.4e-15

82.76

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

SwissProt top hits

e value

%identity

Alignment

A0A377 50S ribosomal protein L2-A, chloroplastic

5.6e-17

81.03

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

A0A398 50S ribosomal protein L2-B, chloroplastic

5.6e-17

81.03

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

P18663 50S ribosomal protein L2-A, chloroplastic

5.6e-17

81.03

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

Q2PMM3 50S ribosomal protein L2-B, chloroplastic

5.6e-17

81.03

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

Q8S8V3 50S ribosomal protein L2-A, chloroplastic

5.6e-17

81.03

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

8.8e-18

79.31

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL T IHNIEITLG+ GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

ATCG01310.1 ribosomal protein L2

8.8e-18

79.31

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Query:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV
        MPL T IHNIEITLG+ GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Subjt:  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

Sequences

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CDS sequence

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ATGCCCTTAAGCACAACCATACATAACATAGAAATCACACTTGGGAAGGGGCAATTAGCTAGAGGAGCAGGTGTTGTAGTGAAACTGATCGCAGAAGAATGGAAATCAAC
CATATTAAAATTACCTCGTGGAGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACTGTC

mRNA sequence

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ATGCCCTTAAGCACAACCATACATAACATAGAAATCACACTTGGGAAGGGGCAATTAGCTAGAGGAGCAGGTGTTGTAGTGAAACTGATCGCAGAAGAATGGAAATCAAC
CATATTAAAATTACCTCGTGGAGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACTGTC

Protein sequence

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MPLSTTIHNIEITLGKGQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

MS009568 (gene) of Bitter gourd (TR) v1 genome