CuGenDBv2

Gene ID	MS009575
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	scaffold813:2414774..2417354
RNA-Seq Expression	MS009575
Synteny	MS009575
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022151610.1 DNA-directed RNA polymerase I subunit rpa49 [Momordica charantia]

2.3e-240

99.09

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA DTKSFELEETHYAEP+ANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTV DDELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSL ESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_022964095.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

6.3e-206

84.74

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K F  EETHYAEP+ANSQSPAKK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EE V+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV E ESP+VA+DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS KGHKIPSMLRQKFSSMFS +ESRRLS EK+DLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

2.4e-205

84.05

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MAEDTKSFELE+ HY+EPDANSQSPAKK +KSEKKKKRV SVNA IQVLSNHP+KTPPLV YFPSGF+PHKDA+EEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIA+NMIFRLDP++RGSDVSE ES +V ++ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE T A+IARNIPTYN SATTP+EAYPLDKIIL GEWS+LED+YSLL+ EAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK+LC IFSYITHLIK+KDQ+SM  V+SAK HK PSM+RQKFSSMF  SE+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_023514670.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

6.3e-206

84.74

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K F  EETHYAEP+ANSQSPAKK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EEAV+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTG NVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV E ESP+VA+DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYP+FVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS KGHKIPSMLRQKFSSMFS +ESRRLS EK+DLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_023547949.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

5.3e-205

83.83

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MAEDTKSFELE+ HY+EPD+N QSPAKK +KSEKKKKRV SVNA IQVLSNHP+KTPPLV YFPSGF+PHKD +EEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIA+NMIFRLDP++RGSDVSE ESP+V ++ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE T A+IARNIPTYN SATTP+EAYPLDKIIL GEWSYLED+YSLL+ EAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK+LC IFSYITHLIK+KDQ+SM  V+SAK HK PSM+RQKFSSMF  SE+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DBN9 DNA-directed RNA polymerase I subunit rpa49

1.1e-240

99.09

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA DTKSFELEETHYAEP+ANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTV DDELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSL ESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

2.2e-204

83.6

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MAEDTKSFELE+ HY+EPD+N QSPAKK +KSEKKKKRV SVNA IQVLSNHP+KTPPLV YFPSGF+PHKD +EEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIA+NMIFRLDP++RGSDVSE ESP+V ++ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD DT+KDLD KMKNVVVNKEALE T A+IARNIPTYN SATTP+EAYPLDKIIL GEWSYLED+YSLL+ EAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK+LC IFSYITHLIK+KDQ+SM  V+SAK HK PSM+RQKFSSMF  SE+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

3.0e-206

84.74

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K F  EETHYAEP+ANSQSPAKK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EE V+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV E ESP+VA+DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS KGHKIPSMLRQKFSSMFS +ESRRLS EK+DLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

1.2e-205

84.05

Show/hide

Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MAEDTKSFELE+ HY+EPDANSQSPAKK +KSEKKKKRV SVNA IQVLSNHP+KTPPLV YFPSGF+PHKDA+EEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIA+NMIFRLDP++RGSDVSE ES +V ++ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE T A+IARNIPTYN SATTP+EAYPLDKIIL GEWS+LED+YSLL+ EAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK+LC IFSYITHLIK+KDQ+SM  V+SAK HK PSM+RQKFSSMF  SE+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1KIP6 DNA-directed RNA polymerase I subunit rpa49-like

3.1e-203

84.05

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Query:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K F  EETHYA P+ANSQSP KK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EEAV+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ
        +VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKV GSDV E ESP+VA+DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS +GHKIPSMLRQKFSSMFS +ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLS VTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

8.1e-07

24.32

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Query:  KSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYA
        K  K +   S    ++++L       PPLV    SGF P            ++ R ++ +  N+ NR   ++  T   V F   N   ++TA  +   Y 
Subjt:  KSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYA

Query:  LGVLDKATQSLKIVPIA-ANMIFRLDPKVRGSD-VSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQVDDSDTQKDLDEKMKNVVV
        L V DK  +  KIVP    N   R    ++  D   +K+  TV+   +      ++   L   +GT++S K   +  S  +V         D+ + NV  
Subjt:  LGVLDKATQSLKIVPIA-ANMIFRLDPKVRGSD-VSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQVDDSDTQKDLDEKMKNVVV

Query:  NKEALEGTNAEIA------RNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAE------ISANYPSFVRNRIYKLQDIQDEEEKKKLCCIF
          EAL  T  +IA      R IP  N  A + ++AY L+ II   E+S +  +  LL    E      +   +  F+  R  +L  I++ ++K+    I 
Subjt:  NKEALEGTNAEIA------RNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAE------ISANYPSFVRNRIYKLQDIQDEEEKKKLCCIF

Query:  SYITHLIKFKDQNSMDGVSSAKGHKI---PSMLRQKFSSMFSLSE---SRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLG
         YI+ L  F       G       K+   P +L       F+ +    S ++S  + D +I ++LVL L  D +S+D   +A DL          F  +G
Subjt:  SYITHLIKFKDQNSMDGVSSAKGHKI---PSMLRQKFSSMFSLSE---SRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLG

Query:  CKFIR---------------KNNLSLVTLPVPLKFPQLSLKRRR
        C+ +                  N     L +PL+FP+    R R
Subjt:  CKFIR---------------KNNLSLVTLPVPLKFPQLSLKRRR

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

3.2e-11

21.5

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Query:  QHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQAKK--LHSLKQVDDSDTQKDLDEK
        ++  YA+G+ DK T+ LKIVP     I  ++  V G  ++   S  +     S +E+ D++++L + +G+K + K+ +K  + +++ +D   T K +D  
Subjt:  QHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQAKK--LHSLKQVDDSDTQKDLDEK

Query:  MKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYL--EDVYSLLRAEAEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT
             V  E  +  + E   ++P ++A     ++ Y ++ I+    +  L  +    ++   +E  +  P + ++++ + +DI+DEE+    C + +++ 
Subjt:  MKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYL--EDVYSLLRAEAEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT

Query:  H---LIKFKDQNS---MDGVSSAKGHKIPSMLRQKFS-SMFSLSESRRLSPEKSDLLISHVLVLTLFADEFS-SDPSDIAKDLRTSPFTLRLHFDNLGCK
        +   L+K K  +     +G +S   + + S+   K +   +++S+  +L       + +++ +  L  ++F  +D   +A+ L  +  +   HF  +GCK
Subjt:  H---LIKFKDQNS---MDGVSSAKGHKIPSMLRQKFS-SMFSLSESRRLSPEKSDLLISHVLVLTLFADEFS-SDPSDIAKDLRTSPFTLRLHFDNLGCK

Query:  FIR-KNNLSLVTLPVPLKFPQ
         +R  +    V L  PLK P+
Subjt:  FIR-KNNLSLVTLPVPLKFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

3.1e-94

43.5

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Query:  EDTKSFELEETHYAEPDANSQSPAKKNRKSEK-------KKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNK-NK
        E+   +  EE  +  P    Q   KK RK +K       + +    V   +  ++  P++  P+V YF +G++P K   +   +  ++ +  VY++K + 
Subjt:  EDTKSFELEETHYAEPDANSQSPAKKNRKSEK-------KKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNK-NK

Query:  PNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKE-SPTVADDELSVQEKADRMRELTNLYG
          R+Q+VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  + +E+E S +    EL   +  +R R     Y 
Subjt:  PNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKE-SPTVADDELSVQEKADRMRELTNLYG

Query:  TKRSIKQAKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISAN-YPSF
        TK+++ + KK  +L   DD+ TQK LD K+  + VN  ALEGT++ +ARNIP YN +ATT  EAYPL+KII  G+WS+LED+Y LL+ E E +   YP F
Subjt:  TKRSIKQAKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISAN-YPSF

Query:  VRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIA
        VRNR+Y+L+DI+D+ +K+ +C   + +THL+KFKD+NSM+G  SAK HK+P + RQKF+SMF  SES R+  +K +LLIS+VLVL+L  D F +DP DIA
Subjt:  VRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIA

Query:  KDLRTSPFTLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRR
        KDLR S   LR HF  LGCKF+++N+ ++ TLP PL FP+++ +RR
Subjt:  KDLRTSPFTLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGAAGACACTAAATCTTTTGAATTGGAAGAAACCCATTACGCGGAACCGGATGCGAACTCACAGTCTCCAGCGAAGAAGAATAGGAAGAGCGAGAAGAAAAAGAA
GCGAGTTTCATCAGTGAATGCCACAATCCAAGTCCTCAGCAACCATCCAGAGAAAACTCCACCGCTAGTTGGTTATTTCCCGTCTGGGTTCAATCCTCACAAGGATGCCG
ATGAGGAAGCGGTCCAGGAACAGAAATCCATTAGGGCTAGGGTTTATAGGAACAAGAACAAACCAAATAGGATGCAGCTGGTTGTAAGTCCAACGGGGTCGAATGTGGAT
TTTGTTGGTACCAACTATTTGGGAGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGGCGACCCAAAGCTTAAAGATCGTGCCTATCGC
GGCAAACATGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTTCTGAAAAGGAATCTCCAACTGTGGCGGATGACGAGCTTTCTGTGCAGGAGAAAGCTGATA
GAATGAGAGAGCTCACCAATCTATATGGAACAAAGAGGTCAATAAAGCAGGCAAAGAAGCTGCATTCTTTGAAGCAAGTAGACGATTCTGACACCCAGAAGGATCTAGAT
GAGAAAATGAAAAATGTAGTGGTGAACAAAGAGGCCTTGGAAGGTACAAATGCGGAAATTGCTCGCAATATACCAACATATAATGCTTCTGCGACTACTCCGCAAGAAGC
TTACCCACTCGACAAGATTATCCTCATGGGAGAATGGAGTTACCTGGAAGATGTTTATTCTCTTTTGCGAGCAGAAGCTGAAATAAGTGCAAATTATCCATCCTTCGTCC
GCAACAGAATTTATAAATTGCAAGATATTCAGGACGAGGAAGAGAAGAAGAAGCTCTGCTGCATATTTTCATACATCACCCATCTAATAAAGTTCAAGGATCAGAATTCT
ATGGATGGTGTTTCTTCTGCGAAGGGCCACAAAATTCCGAGCATGCTACGCCAAAAGTTCTCATCCATGTTCTCGCTTTCGGAGTCAAGAAGGCTGTCGCCAGAGAAATC
CGACCTTCTCATTAGCCACGTTCTGGTGCTTACTCTATTTGCTGATGAATTCAGCAGTGATCCATCAGACATAGCAAAGGATCTGAGAACTAGCCCTTTCACTCTAAGAC
TCCATTTTGATAATTTGGGTTGCAAGTTTATACGCAAGAACAACCTGTCGTTGGTTACGCTACCCGTCCCGCTTAAATTTCCACAGCTGAGTCTAAAGAGACGACGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAEDTKSFELEETHYAEPDANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQLVVSPTGSNVD
FVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVADDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQVDDSDTQKDLD
EKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKFKDQNS
MDGVSSAKGHKIPSMLRQKFSSMFSLSESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

MS009575 (gene) of Bitter gourd (TR) v1 genome