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MS009587 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009587
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold813:2529166..2529258
RNA-Seq ExpressionMS009587
SyntenyMS009587
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2615794.1 unnamed protein product [Spirodela intermedia]1.8e-0677.42Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        CV+CLS FE+GERLRQLP C+HVFH  CIDV
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

CAA7390782.1 unnamed protein product [Spirodela intermedia]1.8e-0677.42Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        CV+CLS FE+GERLRQLP C+HVFH  CIDV
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

KAG7013994.1 E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-0990.32Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        CVLCLSPFEDGE +RQLPSCNHVFHA CIDV
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

RXI06130.1 hypothetical protein DVH24_018172 [Malus domestica]8.0e-0774.19Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        CV+CLS FEDGE +R+LP+CNH FHAPCID+
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

XP_022754807.1 RING-H2 finger protein ATL64-like [Durio zibethinus]1.8e-0676.67Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C +CLS FEDGE +RQLP CNH FHAPCID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

TrEMBL top hitse value%identityAlignment
A0A498KCR5 RING-type E3 ubiquitin transferase3.9e-0774.19Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        CV+CLS FEDGE +R+LP+CNH FHAPCID+
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

A0A6A6LZQ7 RING-type domain-containing protein1.1e-0670.97Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        C +CLS FE+GE +RQLP CNH FHAPCID+
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

A0A6P5ZQG7 RING-type E3 ubiquitin transferase8.6e-0776.67Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C +CLS FEDGE +RQLP CNH FHAPCID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

A0A7I8ICK8 Hypothetical protein8.6e-0777.42Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        CV+CLS FE+GERLRQLP C+HVFH  CIDV
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

A0A7I8K1G1 Hypothetical protein8.6e-0777.42Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        CV+CLS FE+GERLRQLP C+HVFH  CIDV
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL101.1e-0666.67Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        CV+CLS F  GE+LR LP CNH FH  CID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

Q9LF64 RING-H2 finger protein ATL522.9e-0766.67Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C +CLS FE+ E LR LP CNH FH PCID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

Q9M0R5 Putative RING-H2 finger protein ATL366.4e-0764.52Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        C +CLS FED E LR +P C+H FHA CIDV
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

Q9SG96 RING-H2 finger protein ATL723.7e-0763.33Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C++CL  FEDGE++R LP CNH FH  CID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

Q9SRQ8 RING-H2 finger protein ATL514.9e-0763.33Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C +CLS F++ E LR LP CNH FH PCID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

Arabidopsis top hitse value%identityAlignment
AT1G49220.1 RING/U-box superfamily protein7.7e-0866.67Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        CV+CLS F  GE+LR LP CNH FH  CID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

AT3G03550.1 RING/U-box superfamily protein3.5e-0863.33Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C +CLS F++ E LR LP CNH FH PCID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

AT3G10910.1 RING/U-box superfamily protein2.6e-0863.33Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C++CL  FEDGE++R LP CNH FH  CID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID

AT4G09120.1 RING/U-box superfamily protein4.5e-0864.52Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV
        C +CLS FED E LR +P C+H FHA CIDV
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

AT5G17600.1 RING/U-box superfamily protein2.0e-0866.67Show/hide
Query:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID
        C +CLS FE+ E LR LP CNH FH PCID
Subjt:  CVLCLSPFEDGERLRQLPSCNHVFHAPCID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA
mRNA sequenceShow/hide mRNA sequence
TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA
Protein sequenceShow/hide protein sequence
CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV