; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009669 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009669
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpre-mRNA-processing protein 40C
Genome locationscaffold813:3123007..3124893
RNA-Seq ExpressionMS009669
SyntenyMS009669
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0070063 - RNA polymerase binding (molecular function)
InterPro domainsIPR002713 - FF domain
IPR036517 - FF domain superfamily
IPR045148 - Transcription elongation regulator 1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462197.1 PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo]1.4e-7687.79Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD S+TEKLFREHVKMLQERCANEFR LLS+AFTAE VA VSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE
        +SWTMAKRILKPDPRY KVPRKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE

XP_011659583.1 pre-mRNA-processing protein 40C [Cucumis sativus]9.0e-7687.21Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASN DLD S+TEKLFREHVKMLQERCANEFR LLS++FTAE VA VSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE
        NSWTMAKRILKPDPRY KVPRKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE

XP_022146153.1 pre-mRNA-processing protein 40C [Momordica charantia]6.0e-88100Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE
        NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE

XP_023547625.1 pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo]1.3e-7487.21Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASW+ESK+KLEKDPQGRASNPDLD SDTEKLFREHVKMLQERCANEFRTLLS+AFTAE V+ VSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKH-GSKSRATTDAGKFPSKPRIQE
        NSWTMAKR LKPDPRYSK+PRKERE LWRRYADDTLRKQK  ND K EKH  SKSR+T  AGK PSKPRI E
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKH-GSKSRATTDAGKFPSKPRIQE

XP_038900162.1 pre-mRNA-processing protein 40C [Benincasa hispida]3.0e-7991.28Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD SDTEKLFREHVKMLQERCANEFRTLLS+AFTAE VA +SEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE
        NSWTMAKRILKPDPRYSKVPRKERE LWRRYADDTLRKQKL ND KGEKH   KSRAT DAGKFPSKPRI E
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE

TrEMBL top hitse value%identityAlignment
A0A0A0K978 Uncharacterized protein4.4e-7687.21Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASN DLD S+TEKLFREHVKMLQERCANEFR LLS++FTAE VA VSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE
        NSWTMAKRILKPDPRY KVPRKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE

A0A1S3CHX0 pre-mRNA-processing protein 40C6.7e-7787.79Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD S+TEKLFREHVKMLQERCANEFR LLS+AFTAE VA VSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE
        +SWTMAKRILKPDPRY KVPRKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE

A0A5A7V0S2 Pre-mRNA-processing protein 40C6.7e-7787.79Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASWTESK+KLEKDPQGRASNPDLD S+TEKLFREHVKMLQERCANEFR LLS+AFTAE VA VSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE
        +SWTMAKRILKPDPRY KVPRKERE LWRRYADDT+RKQKL ND KGEK+   K+RATTDAGKFPSKPRI +
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGS-KSRATTDAGKFPSKPRIQE

A0A6J1CXT9 pre-mRNA-processing protein 40C2.9e-88100Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE
        NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE

A0A6J1GNF1 pre-mRNA-processing protein 40C6.3e-7587.21Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        MERVRLK+RKKEAVASFQALLVESIKDPQASW+ESK+KLEKDPQGRASNPDLD SDTEKLFREHVKMLQERCANEFRTLLS+AFTAE V+ VSEDGKTVL
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKH-GSKSRATTDAGKFPSKPRIQE
        NSWTMAKR LKPDPRYSK+PRKERE LWRRYADDTLRKQK  ND K EKH  SKSR+T  AGK PSKPRI E
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKH-GSKSRATTDAGKFPSKPRIQE

SwissProt top hitse value%identityAlignment
O14776 Transcription elongation regulator 16.4e-0828.8Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        ++R R + +++EA+ +F+ALL + ++    SW++++  L KD +   S   L+  + EKLF EH++ L ++    FR LL +               T+ 
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKERE
        ++W   K+I+K DPR  K    +R+
Subjt:  NSWTMAKRILKPDPRYSKVPRKERE

Q8CGF7 Transcription elongation regulator 16.4e-0828.8Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        ++R R + +++EA+ +F+ALL + ++    SW++++  L KD +   S   L+  + EKLF EH++ L ++    FR LL +               T+ 
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKERE
        ++W   K+I+K DPR  K    +R+
Subjt:  NSWTMAKRILKPDPRYSKVPRKERE

Q9LT25 Pre-mRNA-processing protein 40C1.8e-4761.04Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        +ERVR KIR+KEA +S+QALLVE I+DP+ASWTESK  LE+DPQ RASNPDL+P+D EKLFR+HVK L ERC ++F+ LL++A ++EA    +EDGKT L
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKS
        NSW+ AK++LKPD RYSK+PR++REV+WRRY +D  RKQ+  N Q+ ++   K+
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKS

Arabidopsis top hitse value%identityAlignment
AT3G19840.1 pre-mRNA-processing protein 40C1.3e-4861.04Show/hide
Query:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL
        +ERVR KIR+KEA +S+QALLVE I+DP+ASWTESK  LE+DPQ RASNPDL+P+D EKLFR+HVK L ERC ++F+ LL++A ++EA    +EDGKT L
Subjt:  MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVL

Query:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKS
        NSW+ AK++LKPD RYSK+PR++REV+WRRY +D  RKQ+  N Q+ ++   K+
Subjt:  NSWTMAKRILKPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGGGTACGCCTAAAAATACGGAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCTCAGGCCTCTTGGACTGAGTCAAAAAT
TAAATTGGAGAAGGATCCACAAGGGCGTGCATCTAATCCTGATTTAGATCCATCTGACACAGAAAAGCTATTCAGAGAACATGTAAAGATGCTGCAAGAGCGTTGTGCTA
ATGAGTTCAGAACTCTATTGTCTGACGCCTTTACAGCCGAGGCAGTAGCACATGTATCAGAAGATGGAAAGACAGTTCTTAACTCTTGGACGATGGCTAAACGAATTCTG
AAGCCTGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGTGTTGTGGCGTCGATATGCTGACGATACGTTGCGGAAGCAAAAGTTGGTAAATGATCAGAAGGG
AGAAAAACATGGCTCAAAGAGTAGAGCAACCACTGACGCTGGAAAATTTCCTTCGAAACCAAGAATCCAAGAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGGGTACGCCTAAAAATACGGAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCTCAGGCCTCTTGGACTGAGTCAAAAAT
TAAATTGGAGAAGGATCCACAAGGGCGTGCATCTAATCCTGATTTAGATCCATCTGACACAGAAAAGCTATTCAGAGAACATGTAAAGATGCTGCAAGAGCGTTGTGCTA
ATGAGTTCAGAACTCTATTGTCTGACGCCTTTACAGCCGAGGCAGTAGCACATGTATCAGAAGATGGAAAGACAGTTCTTAACTCTTGGACGATGGCTAAACGAATTCTG
AAGCCTGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGTGTTGTGGCGTCGATATGCTGACGATACGTTGCGGAAGCAAAAGTTGGTAAATGATCAGAAGGG
AGAAAAACATGGCTCAAAGAGTAGAGCAACCACTGACGCTGGAAAATTTCCTTCGAAACCAAGAATCCAAGAG
Protein sequenceShow/hide protein sequence
MERVRLKIRKKEAVASFQALLVESIKDPQASWTESKIKLEKDPQGRASNPDLDPSDTEKLFREHVKMLQERCANEFRTLLSDAFTAEAVAHVSEDGKTVLNSWTMAKRIL
KPDPRYSKVPRKEREVLWRRYADDTLRKQKLVNDQKGEKHGSKSRATTDAGKFPSKPRIQE