CuGenDBv2

Gene ID	MS009671
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AAA_11 domain-containing protein
Genome location	scaffold813:3142316..3144046
RNA-Seq Expression	MS009671
Synteny	MS009671
Gene Ontology terms	GO:0003723 - RNA binding (molecular function) GO:0004386 - helicase activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR024481 - Helicase Sen1, N-terminal IPR045055 - DNA2/NAM7-like helicase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059329.1 helicase SEN1 isoform X4 [Cucumis melo var. makuwa]

7.6e-118

88.09

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+   TKT+LL RWR IEEE++T  G  +QPHRFQQLKEEWFADAF  LISLP+ESHIWCGSWDIMGPLLETFYNYFKDE HDSPLRRLWKRISMEM  
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQC+CQHHQAKDMYS EYELSSIGPLLDVLRRLDEERVTQYLR+INHRISQGEYD AQDN+EVVS++YEVLMFPVLLDDQSLFTEFGKFIE+VDDIHEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

XP_022145363.1 uncharacterized protein LOC111014831 [Momordica charantia]

6.4e-133

100

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Query:  MTARVPTKTELLTRWRGIEEEEDTDDGLQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQHCI
        MTARVPTKTELLTRWRGIEEEEDTDDGLQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQHCI
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDGLQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQHCI

Query:  QCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHELAL
        QCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHELAL
Subjt:  QCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHELAL

Query:  DGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        DGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  DGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

XP_038897394.1 uncharacterized protein LOC120085485 isoform X1 [Benincasa hispida]

7.6e-118

88.09

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+  PTKT+LL RWRGIEEE+DT  G  LQPHRFQQLKE+WFADAF  LISLP+ESHIWC SWDIMGPLLETFYNYFKDE HDSPLRRLWKRISMEM H
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQCICQHHQAKDMYS EYE SSIGPLLDVLRRLDEERVTQYLR+INHRISQ EYD A+DN+EVVS++YEVLMFPVLLDDQSLF+EFGKFIE+VDDIHEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

XP_038897395.1 uncharacterized protein LOC120085485 isoform X2 [Benincasa hispida]

7.6e-118

88.09

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+  PTKT+LL RWRGIEEE+DT  G  LQPHRFQQLKE+WFADAF  LISLP+ESHIWC SWDIMGPLLETFYNYFKDE HDSPLRRLWKRISMEM H
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQCICQHHQAKDMYS EYE SSIGPLLDVLRRLDEERVTQYLR+INHRISQ EYD A+DN+EVVS++YEVLMFPVLLDDQSLF+EFGKFIE+VDDIHEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

XP_038897401.1 uncharacterized protein LOC120085485 isoform X6 [Benincasa hispida]

7.6e-118

88.09

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+  PTKT+LL RWRGIEEE+DT  G  LQPHRFQQLKE+WFADAF  LISLP+ESHIWC SWDIMGPLLETFYNYFKDE HDSPLRRLWKRISMEM H
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQCICQHHQAKDMYS EYE SSIGPLLDVLRRLDEERVTQYLR+INHRISQ EYD A+DN+EVVS++YEVLMFPVLLDDQSLF+EFGKFIE+VDDIHEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CGD9 uncharacterized protein LOC103500612 isoform X1

4.8e-118

87.66

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+   TKT+LL RWR IEEE++T  G  +QPHRFQQLKEEWFADAF  LISLP+ESHIWCGSWDIMGPLLETFYNYFKDE HDSPLRRLWKRISMEM  
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQC+CQHHQAKDMYS EYELSSIGPLLDVLRRLDEERVTQYLR+INHRISQGEYD AQDN+EVVS++YEVLMFPVLLDDQSLFTEFGKFIE+VDD+HEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

A0A1S4E3P9 uncharacterized protein LOC103500612 isoform X4

4.8e-118

87.66

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+   TKT+LL RWR IEEE++T  G  +QPHRFQQLKEEWFADAF  LISLP+ESHIWCGSWDIMGPLLETFYNYFKDE HDSPLRRLWKRISMEM  
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQC+CQHHQAKDMYS EYELSSIGPLLDVLRRLDEERVTQYLR+INHRISQGEYD AQDN+EVVS++YEVLMFPVLLDDQSLFTEFGKFIE+VDD+HEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

A0A5A7V0K3 Helicase SEN1 isoform X4

3.7e-118

88.09

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+   TKT+LL RWR IEEE++T  G  +QPHRFQQLKEEWFADAF  LISLP+ESHIWCGSWDIMGPLLETFYNYFKDE HDSPLRRLWKRISMEM  
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQC+CQHHQAKDMYS EYELSSIGPLLDVLRRLDEERVTQYLR+INHRISQGEYD AQDN+EVVS++YEVLMFPVLLDDQSLFTEFGKFIE+VDDIHEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

A0A6J1CVR8 uncharacterized protein LOC111014831

3.1e-133

100

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDGLQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQHCI
        MTARVPTKTELLTRWRGIEEEEDTDDGLQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQHCI
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDGLQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQHCI

Query:  QCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHELAL
        QCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHELAL
Subjt:  QCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHELAL

Query:  DGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        DGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
Subjt:  DGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

A0A6J1JUM0 uncharacterized protein LOC111488514 isoform X1

3.8e-115

85.53

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH
        MT+   TKT+LL RWR IEEE+D   G  LQPHRF QLKEEWFADAF  LISLP+++HIWCGSW++MGPLLETFYNYFKDE HDSPLRRLWKRISMEMQH
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDG--LQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQH

Query:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL
        CIQCICQHH+AKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLR+INHRISQ EYD AQDNTEVVSI+YEVLMFPVLL+DQ LFTEFGKFIE+VDDIHEL
Subjt:  CIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHEL

Query:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        ALDGQQQFPG YALFFF+RRVRSVGHRL+A+MGKL
Subjt:  ALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.0e-83

62.29

Show/hide

Query:  MTARVPTKTELLTRWRGIEEEEDTDDGLQP---HRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQ
        M ++V    ELL RWR IEE+E+ +D   P    R  Q KE+WF DAF +LISLPK++HIWCG  DIMGPL+ETFYNYFKD+  DSPL+ LWKRIS EM+
Subjt:  MTARVPTKTELLTRWRGIEEEEDTDDGLQP---HRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQ

Query:  HCIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHE
         C QCICQHHQ ++MY  EYE SS+GPLL VLR+LDEERVT++L++IN +I +G YD    + EVVS++YEVLMFP   DD SL TEF KFIE++D+IHE
Subjt:  HCIQCICQHHQAKDMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHE

Query:  LALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL
        LA    Q+FPG YAL F NRRVR +G+RLA +MGKL
Subjt:  LALDGQQQFPGAYALFFFNRRVRSVGHRLAASMGKL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTGCGAGGGTTCCCACGAAGACGGAACTTTTGACCCGCTGGCGAGGCATCGAGGAAGAAGAGGACACCGACGATGGCTTACAACCTCATCGTTTTCAGCAGCTTAA
AGAGGAATGGTTTGCAGATGCTTTCAATGTTCTGATTAGTTTGCCCAAAGAAAGTCACATTTGGTGTGGCTCTTGGGATATAATGGGGCCTCTTCTGGAAACATTTTACA
ATTACTTCAAGGATGAGGGTCACGACTCTCCTCTCAGGCGCCTATGGAAGAGGATCTCTATGGAGATGCAGCATTGTATCCAGTGCATTTGTCAGCATCATCAAGCCAAA
GATATGTATAGTTTGGAGTATGAGTTGAGTTCCATCGGACCCCTTCTTGATGTCTTGAGAAGACTCGATGAGGAAAGGGTGACTCAGTATTTGAGAGATATCAATCACAG
AATATCCCAGGGCGAATATGATGTTGCACAGGATAATACCGAAGTTGTTAGTATCATATATGAGGTTTTGATGTTTCCTGTCCTTCTGGATGATCAGTCATTGTTCACTG
AGTTTGGGAAGTTTATTGAAGCTGTGGATGATATTCACGAACTTGCTTTGGATGGACAGCAACAGTTTCCGGGTGCTTATGCTCTATTCTTTTTCAATAGAAGAGTACGT
TCTGTAGGTCATCGCTTAGCTGCATCAATGGGAAAATTG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MTARVPTKTELLTRWRGIEEEEDTDDGLQPHRFQQLKEEWFADAFNVLISLPKESHIWCGSWDIMGPLLETFYNYFKDEGHDSPLRRLWKRISMEMQHCIQCICQHHQAK
DMYSLEYELSSIGPLLDVLRRLDEERVTQYLRDINHRISQGEYDVAQDNTEVVSIIYEVLMFPVLLDDQSLFTEFGKFIEAVDDIHELALDGQQQFPGAYALFFFNRRVR
SVGHRLAASMGKL

MS009671 (gene) of Bitter gourd (TR) v1 genome