CuGenDBv2

Gene ID	MS009672
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Helicase SEN1 isoform X4
Genome location	scaffold813:3147012..3147865
RNA-Seq Expression	MS009672
Synteny	MS009672
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004386 - helicase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022145363.1 uncharacterized protein LOC111014831 [Momordica charantia]

1.0e-103

98.97

Show/hide

Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALI SMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWIS SLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

XP_022953569.1 uncharacterized protein LOC111456069 isoform X2 [Cucurbita moschata]

7.2e-94

88.21

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Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTWIS S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

XP_023547837.1 helicase SEN1 isoform X1 [Cucurbita pepo subsp. pepo]

7.2e-94

88.21

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Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTWIS S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

XP_023547838.1 helicase SEN1 isoform X2 [Cucurbita pepo subsp. pepo]

7.2e-94

88.21

Show/hide

Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTWIS S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

XP_023547842.1 uncharacterized protein LOC111806683 isoform X4 [Cucurbita pepo subsp. pepo]

7.2e-94

88.21

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Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTWIS S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CVR8 uncharacterized protein LOC111014831

4.9e-104

98.97

Show/hide

Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALI SMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWIS SLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

A0A6J1GNN5 uncharacterized protein LOC111456069 isoform X1

3.5e-94

88.21

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Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTWIS S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

A0A6J1GQ23 uncharacterized protein LOC111456069 isoform X2

3.5e-94

88.21

Show/hide

Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTWIS S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

A0A6J1JSH1 helicase SEN1 isoform X2

7.8e-94

87.69

Show/hide

Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTW+S S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

A0A6J1JUM0 uncharacterized protein LOC111488514 isoform X1

7.8e-94

87.69

Show/hide

Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+LKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVP S++S+MNHNF+ AEDE++ +FAPNEMDD+CWGGFS+QSNI+STEFKQWMCIP
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
        MLWIDVLV+IDPLVLPVSFSKA+FWARSRFSMVESE T+EGELPLRTW+S S EISSSLGWKVPTGSDDGGDGKES+NSLKVCTMLLPL+KT+NR
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.0e-17

33.67

Show/hide

Query:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP
        GPSLVS+ KDSSLH SLRQPA +L+Q+I+VSDA AL+ S+L      ++    M +     +D+                                    
Subjt:  GPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIP

Query:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLS-LEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR
                                        +ESE   E  + + TW+S S +EI  +LGWKV TGSDDGG GKES+NS+ V  M L LI+T  R
Subjt:  MLWIDVLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLS-LEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNR

Sequences

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CDS sequence

Show/hide CDS sequence

ACTTTATTGACCAGGGGCCCTTCTCTTGTGTCAACACTGAAGGATTCTTCTCTTCACAGCTCACTCAGGCAACCAGCATTTGAGCTTATACAATCTATTATTGTATCAGA
TGCTGCTGCATTGATACACTCGATGCTGGATAGTTGTATAGTACCACATTCCAATGACAGTAGCATGAATCATAACTTCAATGATGCTGAAGATGAGAGCATACCTATGT
TTGCTCCCAATGAAATGGACGATAATTGTTGGGGAGGATTCAGCATACAGAGCAATATAGTTTCGACAGAATTTAAACAGTGGATGTGCATTCCTATGTTATGGATTGAT
GTTCTAGTTGAAATTGATCCTTTGGTTCTACCAGTATCATTTTCTAAAGCTGTTTTCTGGGCTCGATCCCGTTTTTCTATGGTAGAATCTGAAACCACTGCTGAAGGTGA
ACTTCCACTGAGAACTTGGATATCGTTGTCTTTGGAAATTTCCAGTTCACTGGGATGGAAGGTGCCAACTGGTTCTGATGATGGTGGGGATGGGAAAGAATCAAGAAACT
CACTAAAAGTGTGCACAATGTTGCTTCCTTTAATAAAAACATATAACAGGAGAGCTGAAGAAGCAGTGGACTTGGGAGCCGAGAATGGGGGAAAGTCTGATCCTTTCACT
TTT

mRNA sequence

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Protein sequence

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TLLTRGPSLVSTLKDSSLHSSLRQPAFELIQSIIVSDAAALIHSMLDSCIVPHSNDSSMNHNFNDAEDESIPMFAPNEMDDNCWGGFSIQSNIVSTEFKQWMCIPMLWID
VLVEIDPLVLPVSFSKAVFWARSRFSMVESETTAEGELPLRTWISLSLEISSSLGWKVPTGSDDGGDGKESRNSLKVCTMLLPLIKTYNRRAEEAVDLGAENGGKSDPFT
F

MS009672 (gene) of Bitter gourd (TR) v1 genome