; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009697 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009697
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold813:3296461..3296916
RNA-Seq ExpressionMS009697
SyntenyMS009697
Gene Ontology termsGO:0048583 - regulation of response to stimulus (biological process)
GO:0050794 - regulation of cellular process (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-3046.71Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LPL YLG+PLG NP++  FW  I +R+ +KL NW Y++IS+  RL LI+  L++LP Y   LSV+++PS   K +E   RNFLWKG      SHLI   +
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
        +T P+++  L   K+  TN ALLSKWL R++++ + LWR LI  KY    PG
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.1e-3044.74Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LP+ YLG+PLG NPR+  FW+  +E + +KL+ W YS IS+  RL L++  L++LPTY   LS +K+P    K +E   R+FLW G  +K ++HLI  ++
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
         T P++  GL   K+ +TN ALL KWL R+HN+ + LW+  I+AKY  N  G
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-3147.37Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LPL YLG+PLG NP++N FW  I +R+ +KL NW Y++IS+  RL LI+  L++LP Y   LSV+++PS   K +E   RNFLWKG      SHLI   +
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
        +T P+++ GL   ++  TN ALLSKWL R++++ + LWR LI  KY    PG
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.9e-3046.05Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LPL YLG+PLG NP++  FW  I +R+ +KL NW Y++IS+  RL LI+  L++LP Y   LSV+++ S   K +E   RNFLWKG      SHLI   +
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
        +T P+++ GL   ++  TN ALLSKWL R++++ + LWR LI  KY    PG
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.1e-3044.74Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LP+ YLG+PLG NPR+  FW+  +E + +KL+ W YS IS+  RL L++  L++LPTY   LS +K+P    K +E   R+FLW G  +K ++HLI  ++
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
         T P++  GL   K+ +TN ALL KWL R+HN+ + LW+  I+AKY  N  G
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

TrEMBL top hitse value%identityAlignment
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein2.5e-3044.74Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LP+ YLG+PLG NPR+  FW+  +E + +KL+ W YS IS+  RL L++  L++LPTY   LS +K+P    K +E   R+FLW G  +K ++HLI  ++
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
         T P++  GL   K+ +TN ALL KWL R+HN+ + LW+  I+AKY  N  G
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein7.6e-3247.37Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LPL YLG+PLG NP++N FW  I +R+ +KL NW Y++IS+  RL LI+  L++LP Y   LSV+++PS   K +E   RNFLWKG      SHLI   +
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
        +T P+++ GL   ++  TN ALLSKWL R++++ + LWR LI  KY    PG
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein1.9e-3046.05Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LPL YLG+PLG NP++  FW  I +R+ +KL NW Y++IS+  RL LI+  L++LP Y   LSV+++ S   K +E   RNFLWKG      SHLI   +
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
        +T P+++ GL   ++  TN ALLSKWL R++++ + LWR LI  KY    PG
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein1.4e-3046.71Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LPL YLG+PLG NP++  FW  I +R+ +KL NW Y++IS+  RL LI+  L++LP Y   LSV+++PS   K +E   RNFLWKG      SHLI   +
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
        +T P+++  L   K+  TN ALLSKWL R++++ + LWR LI  KY    PG
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein2.5e-3044.74Show/hide
Query:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV
        LP+ YLG+PLG NPR+  FW+  +E + +KL+ W YS IS+  RL L++  L++LPTY   LS +K+P    K +E   R+FLW G  +K ++HLI  ++
Subjt:  LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDV

Query:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG
         T P++  GL   K+ +TN ALL KWL R+HN+ + LW+  I+AKY  N  G
Subjt:  ITLPEDKRGLSSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCCTCTCATTTATTTGGGTATGCCACTTGGGAGAAATCCTAGAGCAAATTTTTTTTGGGAGCTTATTCTTGAAAGAATGGATAGAAAGTTGGATAATTGGCACTATTC
CTATATCTCCGAAAGAGAGAGATTGAATCTAATTGAGGTTGTTTTAAATAATCTTCCAACATACTACCTCTCCCTCTCCGTCTACAAATCTCCTAGTAAAGCAGCGAAGT
TGTTAGAGACGAAAATGAGAAATTTTCTTTGGAAAGGTAGAGGTGAAAAGCCTTCTTCTCACCTTATCCGTCGCGATGTGATTACTCTTCCAGAAGATAAGAGAGGTCTC
AGTAGTGAAAAGATTACAAACACAAACACAGCCCTCCTCTCAAAGTGGTTATGTAGATTTCACAATAAGAAAGATAGGCTTTGGAGATCCCTCATTGAAGCAAAATATGC
AACCAATTTGCCTGGT
mRNA sequenceShow/hide mRNA sequence
CTCCCTCTCATTTATTTGGGTATGCCACTTGGGAGAAATCCTAGAGCAAATTTTTTTTGGGAGCTTATTCTTGAAAGAATGGATAGAAAGTTGGATAATTGGCACTATTC
CTATATCTCCGAAAGAGAGAGATTGAATCTAATTGAGGTTGTTTTAAATAATCTTCCAACATACTACCTCTCCCTCTCCGTCTACAAATCTCCTAGTAAAGCAGCGAAGT
TGTTAGAGACGAAAATGAGAAATTTTCTTTGGAAAGGTAGAGGTGAAAAGCCTTCTTCTCACCTTATCCGTCGCGATGTGATTACTCTTCCAGAAGATAAGAGAGGTCTC
AGTAGTGAAAAGATTACAAACACAAACACAGCCCTCCTCTCAAAGTGGTTATGTAGATTTCACAATAAGAAAGATAGGCTTTGGAGATCCCTCATTGAAGCAAAATATGC
AACCAATTTGCCTGGT
Protein sequenceShow/hide protein sequence
LPLIYLGMPLGRNPRANFFWELILERMDRKLDNWHYSYISERERLNLIEVVLNNLPTYYLSLSVYKSPSKAAKLLETKMRNFLWKGRGEKPSSHLIRRDVITLPEDKRGL
SSEKITNTNTALLSKWLCRFHNKKDRLWRSLIEAKYATNLPG