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MS009698 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009698
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 reverse transcriptase like
Genome locationscaffold813:3297317..3297526
RNA-Seq ExpressionMS009698
SyntenyMS009698
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN75947.1 hypothetical protein VITISV_014170 [Vitis vinifera]2.0e-0544.07Show/hide
Query:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNT
        KW P PFRFEN+WLQ   F++   S W  F    G+ G+   K+L+F+   +K+W KNT
Subjt:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNT

KYP37647.1 Putative ribonuclease H protein At1g65750 family [Cajanus cajan]6.9e-0646.27Show/hide
Query:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTIVQNLLEKI
        W P PFR  + WL+DEGF++LV  +W T + V G+A + L ++LKFL   +K W K T + NL  KI
Subjt:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTIVQNLLEKI

MCH83058.1 LINE-1 reverse transcriptase like [Trifolium medium]2.0e-0540.58Show/hide
Query:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI
        W P PFRF N WL +  F K+V+  W +F +V G  GY+L ++LK L  +++ W K     V + +EKI
Subjt:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI

MCH90314.1 LINE-1 reverse transcriptase like [Trifolium medium]1.5e-0540.85Show/hide
Query:  LKWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI
        L W P PFRF N WL ++ F KLV+  W +F  V G+ GYV+ ++LK L   +K W +     V + ++KI
Subjt:  LKWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]1.2e-0544.83Show/hide
Query:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKN
        +W  CPFR EN+WLQD+ FQ+ ++++W + S   G+ GY L K+L  L+  +K  RKN
Subjt:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKN

TrEMBL top hitse value%identityAlignment
A0A151R530 Putative ribonuclease H protein At1g65750 family3.3e-0646.27Show/hide
Query:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTIVQNLLEKI
        W P PFR  + WL+DEGF++LV  +W T + V G+A + L ++LKFL   +K W K T + NL  KI
Subjt:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTIVQNLLEKI

A0A392M8E5 LINE-1 reverse transcriptase like (Fragment)9.7e-0640.58Show/hide
Query:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI
        W P PFRF N WL +  F K+V+  W +F +V G  GY+L ++LK L  +++ W K     V + +EKI
Subjt:  WRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI

A0A392MVJ2 LINE-1 reverse transcriptase like (Fragment)7.4e-0640.85Show/hide
Query:  LKWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI
        L W P PFRF N WL ++ F KLV+  W +F  V G+ GYV+ ++LK L   +K W +     V + ++KI
Subjt:  LKWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTI--VQNLLEKI

A0A6J1CVN2 uncharacterized protein LOC1110146575.7e-0644.83Show/hide
Query:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKN
        +W  CPFR EN+WLQD+ FQ+ ++++W + S   G+ GY L K+L  L+  +K  RKN
Subjt:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKN

A0A803QQM3 Uncharacterized protein4.3e-0644.12Show/hide
Query:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTIVQNLLEKI
        KW P PFRF+N WL+ + F K  +S W    +  G+ G    K+LK L   VKEW K+T  QN   KI
Subjt:  KWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTIVQNLLEKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAATTAAAATGGAGGCCCTGCCCTTTTCGATTTGAAAATATTTGGCTTCAAGATGAAGGTTTTCAGAAGCTTGTGGATTCTCTTTGGCTGACTTTTTCAGTTGTTATTGG
CTTTGCTGGTTATGTTCTTACGAAGAGGCTTAAATTTCTCTCTTGGAGTGTAAAAGAGTGGAGAAAAAACACAATTGTGCAAAATTTGTTGGAAAAGATT
mRNA sequenceShow/hide mRNA sequence
GAATTAAAATGGAGGCCCTGCCCTTTTCGATTTGAAAATATTTGGCTTCAAGATGAAGGTTTTCAGAAGCTTGTGGATTCTCTTTGGCTGACTTTTTCAGTTGTTATTGG
CTTTGCTGGTTATGTTCTTACGAAGAGGCTTAAATTTCTCTCTTGGAGTGTAAAAGAGTGGAGAAAAAACACAATTGTGCAAAATTTGTTGGAAAAGATT
Protein sequenceShow/hide protein sequence
ELKWRPCPFRFENIWLQDEGFQKLVDSLWLTFSVVIGFAGYVLTKRLKFLSWSVKEWRKNTIVQNLLEKI