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MS009768 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009768
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box/kelch-repeat protein At3g06240-like
Genome locationscaffold173:83304..83585
RNA-Seq ExpressionMS009768
SyntenyMS009768
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443403.1 PREDICTED: F-box protein CPR30-like [Cucumis melo]1.8e-1447.06Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPI---ASAAVVDMDLPVST
        MA+ GNLP+ V++EIL RLP E + RFKCV K WYAL ND K     FS SLQH++LL++R V   ++SG+K+ + + LK P+   +S ++ D+DLP   
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPI---ASAAVVDMDLPVST

Query:  EY
        ++
Subjt:  EY

XP_022150319.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]5.3e-3885.11Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY
        MA+ GNLPEDVMMEILKRLPSECVGRF+CVSKYWYALIND +F+DSLQHR+LLV+RTVIRNEESGEKQTML+SLKFP+ASAAVVDMDLP+S ++
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY

XP_022152190.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]7.7e-3784.04Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY
        MA++GNLPED+MMEILKRLPS+CVGRFKCVSKYWYALIND KF+DSLQH NLLV+ TVIRNEESGEKQTMLTSLKFP+ASAAVVDM LP+S  +
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY

XP_022159389.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]3.5e-2164.44Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPV
        MA+  NL +++M++IL +LP ECV R KCVSKY Y LIND  F+D LQHRNLLV+RT I NEESGE +TML+ LKFP+ S AVVDMD P+
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPV

XP_038906036.1 F-box protein CPR1-like [Benincasa hispida]1.2e-1650.98Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIA---SAAVVDMDLPVST
        MA+ GNLPE+VM+EIL RLP E + RFKCV K WYALIND K     FS+SLQH+ +L++R V +N  SG K+ + + LK P++   S +V D+DLP   
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIA---SAAVVDMDLPVST

Query:  EY
        ++
Subjt:  EY

TrEMBL top hitse value%identityAlignment
A0A5A7UHP3 F-box protein CPR30-like9.0e-1547.06Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPI---ASAAVVDMDLPVST
        MA+ GNLP+ V++EIL RLP E + RFKCV K WYAL ND K     FS SLQH++LL++R V   ++SG+K+ + + LK P+   +S ++ D+DLP   
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPI---ASAAVVDMDLPVST

Query:  EY
        ++
Subjt:  EY

A0A5D3DPN6 F-box protein CPR30-like9.0e-1547.06Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPI---ASAAVVDMDLPVST
        MA+ GNLP+ V++EIL RLP E + RFKCV K WYAL ND K     FS SLQH++LL++R V   ++SG+K+ + + LK P+   +S ++ D+DLP   
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-----FSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPI---ASAAVVDMDLPVST

Query:  EY
        ++
Subjt:  EY

A0A6J1D9N5 F-box/kelch-repeat protein At3g06240-like2.6e-3885.11Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY
        MA+ GNLPEDVMMEILKRLPSECVGRF+CVSKYWYALIND +F+DSLQHR+LLV+RTVIRNEESGEKQTML+SLKFP+ASAAVVDMDLP+S ++
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY

A0A6J1DD85 F-box/kelch-repeat protein At3g06240-like3.7e-3784.04Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY
        MA++GNLPED+MMEILKRLPS+CVGRFKCVSKYWYALIND KF+DSLQH NLLV+ TVIRNEESGEKQTMLTSLKFP+ASAAVVDM LP+S  +
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY

A0A6J1E295 F-box/kelch-repeat protein At3g06240-like1.7e-2164.44Show/hide
Query:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPV
        MA+  NL +++M++IL +LP ECV R KCVSKY Y LIND  F+D LQHRNLLV+RT I NEESGE +TML+ LKFP+ S AVVDMD P+
Subjt:  MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPV

SwissProt top hitse value%identityAlignment
P0C2G2 Putative F-box protein At1g309204.7e-0534.38Show/hide
Query:  NRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGE
        N  ++P D++++IL RLPS+ + R +CVSK W ++I    F++    R+      +I  E+ GE
Subjt:  NRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGE

Q3EBI7 F-box protein At2g409104.7e-0532.95Show/hide
Query:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRN---EESGEKQTMLTSLKFPIASAAVVDMDLPVS
        +P D++MEI+ RLP++ + RFKC+SK W +LI+   F +SL       ++  I     +  G++  +  S   P  +  VVD DL ++
Subjt:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRN---EESGEKQTMLTSLKFPIASAAVVDMDLPVS

Q84X43 F-box only protein 88.1e-0551.35Show/hide
Query:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKF
        +P+D+++EIL RLP + V RFKCVSK+W +L++   F
Subjt:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKF

Q9LQL5 Putative F-box protein At1g324206.2e-0545.83Show/hide
Query:  NLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-FSDSLQHRNL
        N+P D+ +EILK+LP++ + RF+CVSK W ++I+  + F DS+  R+L
Subjt:  NLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-FSDSLQHRNL

Q9SA02 F-box protein At1g310802.5e-0634.85Show/hide
Query:  ANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEK
        AN  ++P D+++EIL RLP++  GRF+CVSK W +++    F++    R+    R +I   + G++
Subjt:  ANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEK

Arabidopsis top hitse value%identityAlignment
AT1G30920.1 F-box family protein3.4e-0634.38Show/hide
Query:  NRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGE
        N  ++P D++++IL RLPS+ + R +CVSK W ++I    F++    R+      +I  E+ GE
Subjt:  NRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGE

AT1G31080.1 F-box family protein1.8e-0734.85Show/hide
Query:  ANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEK
        AN  ++P D+++EIL RLP++  GRF+CVSK W +++    F++    R+    R +I   + G++
Subjt:  ANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEK

AT1G32420.1 F-box and associated interaction domains-containing protein4.4e-0645.83Show/hide
Query:  NLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-FSDSLQHRNL
        N+P D+ +EILK+LP++ + RF+CVSK W ++I+  + F DS+  R+L
Subjt:  NLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLK-FSDSLQHRNL

AT2G40910.1 F-box and associated interaction domains-containing protein3.4e-0632.95Show/hide
Query:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRN---EESGEKQTMLTSLKFPIASAAVVDMDLPVS
        +P D++MEI+ RLP++ + RFKC+SK W +LI+   F +SL       ++  I     +  G++  +  S   P  +  VVD DL ++
Subjt:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRN---EESGEKQTMLTSLKFPIASAAVVDMDLPVS

AT2G40910.2 F-box and associated interaction domains-containing protein3.4e-0632.95Show/hide
Query:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRN---EESGEKQTMLTSLKFPIASAAVVDMDLPVS
        +P D++MEI+ RLP++ + RFKC+SK W +LI+   F +SL       ++  I     +  G++  +  S   P  +  VVD DL ++
Subjt:  LPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRN---EESGEKQTMLTSLKFPIASAAVVDMDLPVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATCGGGGAAATCTACCGGAAGATGTGATGATGGAGATTCTGAAGCGGCTCCCGTCGGAATGTGTTGGTCGATTCAAGTGCGTTTCCAAATACTGGTACGCCCT
AATCAACGACCTTAAATTCTCCGATTCTCTGCAACATCGAAATCTTCTTGTGAGGCGTACCGTAATTAGGAACGAGGAGTCCGGGGAGAAACAAACAATGCTCACCTCCC
TCAAATTTCCCATCGCATCTGCGGCTGTTGTGGACATGGATCTTCCAGTTTCAACTGAATAT
mRNA sequenceShow/hide mRNA sequence
ATGGCGAATCGGGGAAATCTACCGGAAGATGTGATGATGGAGATTCTGAAGCGGCTCCCGTCGGAATGTGTTGGTCGATTCAAGTGCGTTTCCAAATACTGGTACGCCCT
AATCAACGACCTTAAATTCTCCGATTCTCTGCAACATCGAAATCTTCTTGTGAGGCGTACCGTAATTAGGAACGAGGAGTCCGGGGAGAAACAAACAATGCTCACCTCCC
TCAAATTTCCCATCGCATCTGCGGCTGTTGTGGACATGGATCTTCCAGTTTCAACTGAATAT
Protein sequenceShow/hide protein sequence
MANRGNLPEDVMMEILKRLPSECVGRFKCVSKYWYALINDLKFSDSLQHRNLLVRRTVIRNEESGEKQTMLTSLKFPIASAAVVDMDLPVSTEY