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MS009780 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009780
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold173:208244..208468
RNA-Seq ExpressionMS009780
SyntenyMS009780
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50764.1 hypothetical protein EZV62_023288 [Acer yangbiense]4.2e-0940Show/hide
Query:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G +++KS YK+A+ D++   +        WWK+ W ++LP KI+IF WK  + I+P M+ L   GM VS +CP C
Subjt:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
XP_030486845.1 uncharacterized protein LOC115703751 [Cannabis sativa]4.2e-0940Show/hide
Query:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G YTVKS Y +A        S S    ++WWK+FW++ LP K++IFLW+ + + +P    L H  +  S ICP+C
Subjt:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
XP_030502765.1 uncharacterized protein LOC115717936 [Cannabis sativa]5.4e-0940Show/hide
Query:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G+Y VKS Y+LA+      ++ S    E WW  FWK+ +PPK++IF+WKV  + +PV   L    +  S  C IC
Subjt:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
XP_030509046.1 uncharacterized protein LOC115723707 [Cannabis sativa]1.9e-0949.37Show/hide
Query:  GVYTVKSDYKLAM----KDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G Y+VKS + LA     KD+    S SDDYK  WWK FWK+ LPPK+KIF WKV+QN +PV   L    +  S++C  C
Subjt:  GVYTVKSDYKLAM----KDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
XP_030922958.1 uncharacterized protein LOC115949824 [Quercus lobata]2.2e-1046.15Show/hide
Query:  GVYTVKSDYKLAMK---DRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        GV+TVKS Y +A K   D+ L  S S D K   WK+ WK+ LPPKIKIF W+   N +PV V +   G+++   CP+C
Subjt:  GVYTVKSDYKLAMK---DRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
TrEMBL top hitse value%identityAlignment
A0A803NWY3 Uncharacterized protein3.7e-1140Show/hide
Query:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G+YTVKS Y++A  + + A + +D +   WW + WK+++PPK++ F+W+V    IPV   LR+ GM++ S C  C
Subjt:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
A0A803PFL5 Uncharacterized protein5.3e-1049.37Show/hide
Query:  GVYTVKSDYKLAM----KDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G Y+VKS + LA     KD+    S SDDYK  WWK FWK+ LPPK+KIF WKV+QN +PV   L    +  S++C  C
Subjt:  GVYTVKSDYKLAM----KDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
A0A803Q6Y1 Uncharacterized protein9.0e-1049.37Show/hide
Query:  GVYTVKSDYKLAM----KDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G Y+VKS + LA     KD+    S SDDYK  WWK FWK+ LPPK+KIF WKV+QN +PV   L    +  S++C  C
Subjt:  GVYTVKSDYKLAM----KDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
A0A803Q9W0 Uncharacterized protein3.1e-1038.67Show/hide
Query:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G YTV S YK+   +  +A + +D+  ++WW+  WK + PPK++ F+W+V    +PV +NLR  GM+V+ +C  C
Subjt:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
A0A803QSN3 Uncharacterized protein6.9e-1038.67Show/hide
Query:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G+YTV S YK+A  + + A   S+++ ++WW E WK+++PPK++ F W++    IPV + LR+ GM++   C  C
Subjt:  GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.9e-0434.57Show/hide
Query:  GVYTVKSDYKLAMKD---RILANSP---SDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
        G YTV+S Y L   D    I A +P   S D K R     W + + PK+K FLW+ +   +     L   GM +   CP C
Subjt:  GVYTVKSDYKLAMKD---RILANSP---SDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC
AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0437.04Show/hide
Query:  GVYTVKSDYKLAMKDRILANSP---SDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNL--RHMGMEVSSI-CPIC
        G YTVKS Y +  +     +SP   S+      +++ WK    PKI+ FLWK + N +PV   L  RH+  E + I CP C
Subjt:  GVYTVKSDYKLAMKDRILANSP---SDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNL--RHMGMEVSSI-CPIC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAGTTTACACTGTCAAGAGTGACTATAAGCTTGCAATGAAAGACCGTATCCTAGCTAATAGCCCTAGTGATGATTACAAGGAGAGGTGGTGGAAAGAGTTTTGGAAAAT
CGATCTCCCTCCAAAGATTAAAATCTTCCTTTGGAAAGTAGTTCAAAATATTATTCCAGTGATGGTCAATTTGAGACACATGGGCATGGAAGTTTCTTCTATTTGTCCTA
TCTGT
mRNA sequenceShow/hide mRNA sequence
GGAGTTTACACTGTCAAGAGTGACTATAAGCTTGCAATGAAAGACCGTATCCTAGCTAATAGCCCTAGTGATGATTACAAGGAGAGGTGGTGGAAAGAGTTTTGGAAAAT
CGATCTCCCTCCAAAGATTAAAATCTTCCTTTGGAAAGTAGTTCAAAATATTATTCCAGTGATGGTCAATTTGAGACACATGGGCATGGAAGTTTCTTCTATTTGTCCTA
TCTGT
Protein sequenceShow/hide protein sequence
GVYTVKSDYKLAMKDRILANSPSDDYKERWWKEFWKIDLPPKIKIFLWKVVQNIIPVMVNLRHMGMEVSSICPIC