; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009809 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009809
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S21, chloroplastic
Genome locationscaffold173:453410..454577
RNA-Seq ExpressionMS009809
SyntenyMS009809
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAL35983.1 ribosome-like protein, partial [Cucumis sativus]4.3e-6881.77Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPP-LAFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP
        +SLS+FFSFL P+KPPPPK   P +A SP P   A  Q Q  KSRDGS++L PQ  QGP+HSEPLSAELAS+ICPSLA+ANT+FFRSAYNVQVVVDDNEP
Subjt:  SSLSNFFSFLFPTKPPPPKSPPP-LAFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP

Query:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN
        EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPE+++
Subjt:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN

KAA0042889.1 hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa]4.6e-7083.98Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP
        +SLS+FFSFL P+KPPPPK   PL A SP P   A AQ Q  KSRDGS++LKPQ  QGP+HSEPLSAELAS+ICPSLAFANT+FFRSAYNVQV+VDDNEP
Subjt:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP

Query:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN
        EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPEE++
Subjt:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN

XP_008450090.2 PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]6.0e-7084.92Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP
        +SLS+FFSFL P+KPPPPK   PL A SP P   A AQ Q  KSRDGS++LKPQ  QGP+HSEPLSAELAS+ICPSLAFANT+FFRSAYNVQV+VDDNEP
Subjt:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP

Query:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEE
        EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPEE
Subjt:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEE

XP_022154139.1 30S ribosomal protein S21, chloroplastic [Momordica charantia]2.3e-9098.9Show/hide
Query:  ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEER
        ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQP KSRDGSL+LKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEER
Subjt:  ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEER

Query:  LLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL
        LLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL
Subjt:  LLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL

XP_038900112.1 30S ribosomal protein S21, chloroplastic [Benincasa hispida]6.0e-7082.51Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPPLAFSPP------PATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDN
        +SLS+FFSFL P+KPPPPK   PL  S P       A AQ Q  KS+DGS+SLKPQ  QGP+HSEPLSAELAS+ICPSLAFANT+FFRSAYNVQV+VDDN
Subjt:  SSLSNFFSFLFPTKPPPPKSPPPLAFSPP------PATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDN

Query:  EPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN
        EPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPEE+N
Subjt:  EPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN

TrEMBL top hitse value%identityAlignment
A0A0A0LDL7 Uncharacterized protein2.1e-6881.77Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPP-LAFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP
        +SLS+FFSFL P+KPPPPK   P +A SP P   A  Q Q  KSRDGS++L PQ  QGP+HSEPLSAELAS+ICPSLA+ANT+FFRSAYNVQVVVDDNEP
Subjt:  SSLSNFFSFLFPTKPPPPKSPPP-LAFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP

Query:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN
        EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPE+++
Subjt:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN

A0A1S3BNG4 uncharacterized protein LOC1034917802.9e-7084.92Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP
        +SLS+FFSFL P+KPPPPK   PL A SP P   A AQ Q  KSRDGS++LKPQ  QGP+HSEPLSAELAS+ICPSLAFANT+FFRSAYNVQV+VDDNEP
Subjt:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP

Query:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEE
        EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPEE
Subjt:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEE

A0A5D3C287 Uncharacterized protein2.2e-7083.98Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP
        +SLS+FFSFL P+KPPPPK   PL A SP P   A AQ Q  KSRDGS++LKPQ  QGP+HSEPLSAELAS+ICPSLAFANT+FFRSAYNVQV+VDDNEP
Subjt:  SSLSNFFSFLFPTKPPPPKSPPPL-AFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP

Query:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN
        EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPEE++
Subjt:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN

A0A6J1DL66 30S ribosomal protein S21, chloroplastic1.1e-9098.9Show/hide
Query:  ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEER
        ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQP KSRDGSL+LKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEER
Subjt:  ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEER

Query:  LLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL
        LLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL
Subjt:  LLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL

Q8VWX5 Ribosome-like protein (Fragment)2.1e-6881.77Show/hide
Query:  SSLSNFFSFLFPTKPPPPKSPPP-LAFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP
        +SLS+FFSFL P+KPPPPK   P +A SP P   A  Q Q  KSRDGS++L PQ  QGP+HSEPLSAELAS+ICPSLA+ANT+FFRSAYNVQVVVDDNEP
Subjt:  SSLSNFFSFLFPTKPPPPKSPPP-LAFSPPP---ATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEP

Query:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN
        EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPE+++
Subjt:  EERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN

SwissProt top hitse value%identityAlignment
A1WW12 30S ribosomal protein S215.9e-0446.43Show/hide
Query:  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR
        V V +NEP E  L RF+R   +AGV+ E +RR ++E    VRKRK   A KR+ +R
Subjt:  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR

B0JIQ1 30S ribosomal protein S215.9e-0444.83Show/hide
Query:  QVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRR
        QVVV  NE  E  L RF+R+V +AG+  + K+ +FFE  Q+ RKRK+    ++  RRR
Subjt:  QVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRR

B8GPU0 30S ribosomal protein S213.5e-0446.43Show/hide
Query:  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR
        V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK+  A KR  +R
Subjt:  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR

P48949 30S ribosomal protein S211.6e-0448.28Show/hide
Query:  QVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRR
        QVVV  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Subjt:  QVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRR

P82024 30S ribosomal protein S21, chloroplastic2.2e-3554.14Show/hide
Query:  SSLSNFFSFLFP--TKPPP---PKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNE
        SSL NF S LFP  T  PP   PK P P + S    +  I  +K  + +++ K          E    +L +++CPSLAF+NTL+FRSAYNVQV+VDDNE
Subjt:  SSLSNFFSFLFP--TKPPP---PKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNE

Query:  PEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQP--RFTPQNKQDVPATKQEADDDNWDLPE
         EERLLNRFRREVMRAGVIQECKRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D DNWD+PE
Subjt:  PEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQP--RFTPQNKQDVPATKQEADDDNWDLPE

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein2.0e-3951.96Show/hide
Query:  SLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEERLL
        SL++F SF+ P K     +PPP    P P  +Q +       S+++    E+  S +  LS+ELAS+ICPSLA++NTLFF S YNVQV V+DNE EERL+
Subjt:  SLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEERLL

Query:  NRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPAT----KQEADDDNWDLPEED
        NRFRREVMR GVIQECKRRR+FEN QD +KR++R+AAKRN++RRPQ RFT + +++  A     K++ ++DNW++P  D
Subjt:  NRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPAT----KQEADDDNWDLPEED

AT5G63300.1 Ribosomal protein S21 family protein9.3e-2138.67Show/hide
Query:  SLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSA-YNVQVVVDDNEPEERL
        SLS   S L  +KPP P S  P+        + +  R S+  S++ K    +   H + ++     +  PSLA AN +FF+S+ YNV+VV  D E EE+L
Subjt:  SLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSA-YNVQVVVDDNEPEERL

Query:  LNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDV-----PATKQEADDDNWDLPEED
        +N F+R   RAGV+QE +RRRFFE++ + + RK++EAAK+ R+RRP P+  P +  ++      A++++  DD+W+LP ED
Subjt:  LNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDV-----PATKQEADDDNWDLPEED

AT5G63300.2 Ribosomal protein S21 family protein3.4e-1540.28Show/hide
Query:  SLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSA-YNVQVVVDDNEPEERL
        SLS   S L  +KPP P S  P+        + +  R S+  S++ K    +   H + ++     +  PSLA AN +FF+S+ YNV+VV  D E EE+L
Subjt:  SLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSA-YNVQVVVDDNEPEERL

Query:  LNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR
        +N F+R   RAGV+QE +RRRFFE++ + + RK++EAAK+ R+R
Subjt:  LNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTCTTCCCTCTCCAATTTCTTCTCCTTCCTCTTCCCCACCAAACCCCCGCCACCCAAATCCCCGCCGCCCCTCGCTTTCTCTCCTCCTCCGGCGACGGCTCAGATTCA
GCCCCGCAAATCCAGAGATGGATCGCTTTCCCTGAAGCCCCAACATGAACAGGGTCCGAGCCACTCCGAGCCCTTGTCCGCCGAATTGGCCTCCCTCATCTGCCCCTCCC
TCGCCTTCGCCAACACTCTCTTCTTCAGATCGGCCTACAATGTGCAGGTGGTCGTGGATGATAACGAGCCGGAGGAGAGGCTTCTCAACAGATTCCGGCGAGAGGTCATG
AGGGCCGGCGTCATTCAGGAGTGTAAGAGACGGCGATTCTTTGAGAACACGCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCCAAGCGCAACCGCCGGAGGCGCCC
ACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGACAATTCCTTATTA
mRNA sequenceShow/hide mRNA sequence
GCTTCTTCCCTCTCCAATTTCTTCTCCTTCCTCTTCCCCACCAAACCCCCGCCACCCAAATCCCCGCCGCCCCTCGCTTTCTCTCCTCCTCCGGCGACGGCTCAGATTCA
GCCCCGCAAATCCAGAGATGGATCGCTTTCCCTGAAGCCCCAACATGAACAGGGTCCGAGCCACTCCGAGCCCTTGTCCGCCGAATTGGCCTCCCTCATCTGCCCCTCCC
TCGCCTTCGCCAACACTCTCTTCTTCAGATCGGCCTACAATGTGCAGGTGGTCGTGGATGATAACGAGCCGGAGGAGAGGCTTCTCAACAGATTCCGGCGAGAGGTCATG
AGGGCCGGCGTCATTCAGGAGTGTAAGAGACGGCGATTCTTTGAGAACACGCAGGATGTCAGGAAGCGCAAGTCTCGCGAGGCTGCCAAGCGCAACCGCCGGAGGCGCCC
ACAGCCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGACAATTCCTTATTA
Protein sequenceShow/hide protein sequence
ASSLSNFFSFLFPTKPPPPKSPPPLAFSPPPATAQIQPRKSRDGSLSLKPQHEQGPSHSEPLSAELASLICPSLAFANTLFFRSAYNVQVVVDDNEPEERLLNRFRREVM
RAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNSLL