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MS009849 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009849
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger protein 6
Genome locationscaffold173:794802..795227
RNA-Seq ExpressionMS009849
SyntenyMS009849
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022634.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-3864.42Show/hide
Query:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPS-----ASP
        MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH         PPPPPP+     ASP
Subjt:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPS-----ASP

Query:  AMAA----SFLDEHWQLGHQNHH-------RAALSSASTPEDALSPNAD-AVENVTIDLTLRL
        +  A    +  DEHW   HQN+H        +A +SAS   + LSPNAD AVE+VTIDLTLRL
Subjt:  AMAA----SFLDEHWQLGHQNHH-------RAALSSASTPEDALSPNAD-AVENVTIDLTLRL

XP_022156503.1 zinc finger protein 6 [Momordica charantia]2.8e-75100Show/hide
Query:  MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDE
        MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDE
Subjt:  MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDE

Query:  HWQLGHQNHHRAALSSASTPEDALSPNADAVENVTIDLTLRL
        HWQLGHQNHHRAALSSASTPEDALSPNADAVENVTIDLTLRL
Subjt:  HWQLGHQNHHRAALSSASTPEDALSPNADAVENVTIDLTLRL

XP_022928226.1 protein LATE FLOWERING-like [Cucurbita moschata]9.5e-3963.87Show/hide
Query:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS
        MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH         PPPPP        PS
Subjt:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS

Query:  ASPAMAASFLDEHWQLGHQNHHRAALSSASTPEDALSPNAD-AVENVTIDLTLRL
         +    ++  DEHW     NH+R   ++AS   + LSPNAD AVE+VTIDLTLRL
Subjt:  ASPAMAASFLDEHWQLGHQNHHRAALSSASTPEDALSPNAD-AVENVTIDLTLRL

XP_022934585.1 protein LATE FLOWERING-like [Cucurbita moschata]5.6e-3964.29Show/hide
Query:  MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHF-------PP-----HHILNSP--
        MADPAIYDFL+QTTT     PK SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH        PP     HH L  P  
Subjt:  MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHF-------PP-----HHILNSP--

Query:  --PPPPPSASPAMAASFLDEHWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL
          P P P+ +PA  A FL +HW   +QNH+ A     A +SAS   DALSPNAD AVE+VTIDLTLRL
Subjt:  --PPPPPSASPAMAASFLDEHWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL

XP_022989523.1 protein LATE FLOWERING-like [Cucurbita maxima]2.8e-3864.56Show/hide
Query:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS
        MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH         PPPPP        PS
Subjt:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS

Query:  ASPAMAASFLDEHWQLGHQNHH---RAALSSASTPEDALSPNAD-AVENVTIDLTLRL
        A+    ++  DEHW   HQN+H       +SAS   + LSPNAD AVE+VTIDLTLRL
Subjt:  ASPAMAASFLDEHWQLGHQNHH---RAALSSASTPEDALSPNAD-AVENVTIDLTLRL

TrEMBL top hitse value%identityAlignment
A0A6J1DQT0 zinc finger protein 61.4e-75100Show/hide
Query:  MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDE
        MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDE
Subjt:  MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDE

Query:  HWQLGHQNHHRAALSSASTPEDALSPNADAVENVTIDLTLRL
        HWQLGHQNHHRAALSSASTPEDALSPNADAVENVTIDLTLRL
Subjt:  HWQLGHQNHHRAALSSASTPEDALSPNADAVENVTIDLTLRL

A0A6J1EJQ6 protein LATE FLOWERING-like4.6e-3963.87Show/hide
Query:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS
        MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH         PPPPP        PS
Subjt:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS

Query:  ASPAMAASFLDEHWQLGHQNHHRAALSSASTPEDALSPNAD-AVENVTIDLTLRL
         +    ++  DEHW     NH+R   ++AS   + LSPNAD AVE+VTIDLTLRL
Subjt:  ASPAMAASFLDEHWQLGHQNHHRAALSSASTPEDALSPNAD-AVENVTIDLTLRL

A0A6J1F843 protein LATE FLOWERING-like2.7e-3964.29Show/hide
Query:  MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHF-------PP-----HHILNSP--
        MADPAIYDFL+QTTT     PK SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH        PP     HH L  P  
Subjt:  MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHF-------PP-----HHILNSP--

Query:  --PPPPPSASPAMAASFLDEHWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL
          P P P+ +PA  A FL +HW   +QNH+ A     A +SAS   DALSPNAD AVE+VTIDLTLRL
Subjt:  --PPPPPSASPAMAASFLDEHWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL

A0A6J1J5R2 protein LATE FLOWERING-like3.9e-3863.41Show/hide
Query:  MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLH---FPP--------HHILNSPPPP
        MADPAIYDFL+QTTT     PK SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH    PP        HH L  P   
Subjt:  MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLH---FPP--------HHILNSPPPP

Query:  PPSASPAMA-ASFLDEHWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL
         P+ +P  A A FL +HW   +QNH+ A       +SAS   DALSPN D AVE+VTIDLTLRL
Subjt:  PPSASPAMA-ASFLDEHWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL

A0A6J1JQI7 protein LATE FLOWERING-like1.3e-3864.56Show/hide
Query:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS
        MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH         PPPPP        PS
Subjt:  MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPP--------PS

Query:  ASPAMAASFLDEHWQLGHQNHH---RAALSSASTPEDALSPNAD-AVENVTIDLTLRL
        A+    ++  DEHW   HQN+H       +SAS   + LSPNAD AVE+VTIDLTLRL
Subjt:  ASPAMAASFLDEHWQLGHQNHH---RAALSSASTPEDALSPNAD-AVENVTIDLTLRL

SwissProt top hitse value%identityAlignment
Q39263 Zinc finger protein 41.9e-1053.23Show/hide
Query:  LSQTTTDPKPSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDL
        LS T+    P ++ Q Q S S R+F C YC RKFY+SQALGGHQNAHKRER  +++     L
Subjt:  LSQTTTDPKPSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDL

Q39266 Zinc finger protein 72.2e-0948.53Show/hide
Query:  LSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHH
        L+ T  D   S K +   ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++  H   + F  HH
Subjt:  LSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHH

Q42485 Zinc finger protein 14.8e-0945.76Show/hide
Query:  IYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        + D    +++     +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  IYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

Q9FFX4 Zinc finger protein KNUCKLES2.7e-1264.71Show/hide
Query:  TTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        ++  + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+
Subjt:  TTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

Q9FKA9 Protein LATE FLOWERING1.1e-1051.39Show/hide
Query:  KPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKP-------FHSDLLHFPPHHILNSP
        K + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+         ++D LH  P   L+SP
Subjt:  KPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKP-------FHSDLLHFPPHHILNSP

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 71.5e-1048.53Show/hide
Query:  LSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHH
        L+ T  D   S K +   ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++  H   + F  HH
Subjt:  LSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHH

AT1G66140.1 zinc finger protein 41.4e-1153.23Show/hide
Query:  LSQTTTDPKPSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDL
        LS T+    P ++ Q Q S S R+F C YC RKFY+SQALGGHQNAHKRER  +++     L
Subjt:  LSQTTTDPKPSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDL

AT1G80730.1 zinc-finger protein 13.4e-1045.76Show/hide
Query:  IYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        + D    +++     +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  IYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein1.9e-1364.71Show/hide
Query:  TTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        ++  + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+
Subjt:  TTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

AT5G48890.1 C2H2-like zinc finger protein8.1e-1251.39Show/hide
Query:  KPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKP-------FHSDLLHFPPHHILNSP
        K + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+         ++D LH  P   L+SP
Subjt:  KPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKP-------FHSDLLHFPPHHILNSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACCCAGCCATTTACGACTTCCTGAGCCAAACAACAACGGATCCAAAACCTTCGAGAAAGTCCCAATCCCAATACTCTTCGTCTCGCATTTTCCCATGCCTTTA
TTGCCCTCGCAAATTCTACACTTCCCAAGCACTAGGCGGCCACCAGAACGCCCACAAGCGCGAGAGAGCCGCCTCTCGCAAGCCCTTCCACTCCGATCTCCTCCATTTCC
CTCCCCACCATATCCTCAACTCGCCGCCGCCGCCGCCGCCGTCGGCCTCGCCGGCCATGGCGGCTTCTTTTCTCGACGAGCATTGGCAGCTCGGCCACCAGAACCACCAC
CGCGCCGCCCTCTCCTCCGCCTCGACGCCGGAAGACGCTCTCTCCCCCAACGCCGACGCCGTTGAAAACGTCACCATCGATCTCACTCTTCGCCTA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACCCAGCCATTTACGACTTCCTGAGCCAAACAACAACGGATCCAAAACCTTCGAGAAAGTCCCAATCCCAATACTCTTCGTCTCGCATTTTCCCATGCCTTTA
TTGCCCTCGCAAATTCTACACTTCCCAAGCACTAGGCGGCCACCAGAACGCCCACAAGCGCGAGAGAGCCGCCTCTCGCAAGCCCTTCCACTCCGATCTCCTCCATTTCC
CTCCCCACCATATCCTCAACTCGCCGCCGCCGCCGCCGCCGTCGGCCTCGCCGGCCATGGCGGCTTCTTTTCTCGACGAGCATTGGCAGCTCGGCCACCAGAACCACCAC
CGCGCCGCCCTCTCCTCCGCCTCGACGCCGGAAGACGCTCTCTCCCCCAACGCCGACGCCGTTGAAAACGTCACCATCGATCTCACTCTTCGCCTA
Protein sequenceShow/hide protein sequence
MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHH
RAALSSASTPEDALSPNADAVENVTIDLTLRL