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MS009852 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009852
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At4g35130, chloroplastic-like
Genome locationscaffold173:821134..821293
RNA-Seq ExpressionMS009852
SyntenyMS009852
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637250.1 hypothetical protein CSA_007713 [Cucumis sativus]7.3e-1382.69Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IANYAAHRLLEL PDNVG+YT LLSN QASVGQ +E EKLRS+VYEK+LVKK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

XP_008457591.1 PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo]5.6e-1382.69Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IANYAAHRLLEL PDNVG+YT LLSN QASVGQ +E EKLRS+VYEKNL KK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

XP_022153922.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Momordica charantia]5.6e-1380.77Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IANYAAHRLLEL PDNVG+YT LLSN QA+VGQ ++VEKLRS+VYEK+LVKK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

XP_022967941.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucurbita maxima]3.3e-1384.62Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IA YAAHRLLEL PDNVG+YT LLSN QASVGQ +EVEKLRS+VYEKNLVKK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

XP_038883286.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Benincasa hispida]1.1e-1384.62Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IANYAAHRLLEL PDNVG+YT LLSN QASVGQ +EVEKLRS+VYEK+LVKK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

TrEMBL top hitse value%identityAlignment
A0A1S2Y1P3 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like5.0e-0767.35Show/hide
Query:  YAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        YAA RLLE+ PDNVG+YT LLSNV+AS G+  EVE+LR ++ EKNL KK
Subjt:  YAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

A0A1S3C6I7 pentatricopeptide repeat-containing protein At4g35130, chloroplastic2.7e-1382.69Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IANYAAHRLLEL PDNVG+YT LLSN QASVGQ +E EKLRS+VYEKNL KK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

A0A6J1DKA1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like2.7e-1380.77Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IANYAAHRLLEL PDNVG+YT LLSN QA+VGQ ++VEKLRS+VYEK+LVKK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

A0A6J1EYH5 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like1.8e-1280.77Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IA YAAHRLLEL PDNVG+YT LLSN QASVGQ +EVEKLRS+VYEK+ VKK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

A0A6J1HTH3 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like1.6e-1384.62Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        IA YAAHRLLEL PDNVG+YT LLSN QASVGQ +EVEKLRS+VYEKNLVKK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.8e-0540.38Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK
        +   AA++L EL P+N G+Y  LL+N+ A++G+  ++EK+RS++    L KK
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK

AT5G44230.1 Pentatricopeptide repeat (PPR) superfamily protein1.0e-0449.02Show/hide
Query:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVK
        IA  AA  L EL PD +G+Y  LLSNV AS G    V ++R ++ EK L K
Subjt:  IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCGCTAACTATGCTGCCCACAGGCTTCTTGAGTTAAGACCTGATAATGTGGGCCATTATACTTATTTGTTGAGCAATGTACAGGCTAGTGTTGGGCAGTGCTATGAAGT
TGAAAAATTACGAAGTATTGTGTATGAGAAAAATCTTGTCAAGAAA
mRNA sequenceShow/hide mRNA sequence
ATCGCTAACTATGCTGCCCACAGGCTTCTTGAGTTAAGACCTGATAATGTGGGCCATTATACTTATTTGTTGAGCAATGTACAGGCTAGTGTTGGGCAGTGCTATGAAGT
TGAAAAATTACGAAGTATTGTGTATGAGAAAAATCTTGTCAAGAAA
Protein sequenceShow/hide protein sequence
IANYAAHRLLELRPDNVGHYTYLLSNVQASVGQCYEVEKLRSIVYEKNLVKK