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MS009892 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009892
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold206:259438..259820
RNA-Seq ExpressionMS009892
SyntenyMS009892
Gene Ontology termsGO:0009058 - biosynthetic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ36601.1 putative RNA-directed DNA polymerase [Rosa chinensis]5.4e-2554.92Show/hide
Query:  FRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLS
        F  + GLKIN+ K S++GIN E+ +L R A   GCE+G +P  YLGLPLG N K  SFW  V+EK++K L  WKKAF S+ GRLTLIQ VLS +P YYLS
Subjt:  FRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLS

Query:  LFQALVAVCTSLEKIMRDFMWE
        LFQ  V V   LE +++ F W+
Subjt:  LFQALVAVCTSLEKIMRDFMWE

TQD93576.1 hypothetical protein C1H46_020784 [Malus baccata]2.4e-2556.41Show/hide
Query:  GLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLSLFQAL
        GLKIN+ K  + GIN +  KL R A   GCEVG +P  YLGLPLG   +AL FW  V+EKM+KRL  WKKAF S+ GRLTLIQ VL  +P+YY+SLF+  
Subjt:  GLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLSLFQAL

Query:  VAVCTSLEKIMRDFMWE
          V   LEK+M+ F+WE
Subjt:  VAVCTSLEKIMRDFMWE

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]6.3e-2656.1Show/hide
Query:  IFRSYLGLKINRGKSSILGINCESSKLL-RASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYL
        +F +  GLKIN+ K S+ GIN +  KL   A   GCEVG++P  YLGLPLG   KAL FW  V+EKM+KRL  WKKAF SK GRLTLIQ VL  +P+YY+
Subjt:  IFRSYLGLKINRGKSSILGINCESSKLL-RASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYL

Query:  SLFQALVAVCTSLEKIMRDFMWE
        SLF+    V   LEK+M+ F+WE
Subjt:  SLFQALVAVCTSLEKIMRDFMWE

XP_020420593.1 uncharacterized protein LOC18774736 [Prunus persica]5.4e-2552.99Show/hide
Query:  GLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYLSLFQAL
        G++IN+ K S++GIN +   L   A   GCEVG +P SYLGLPLG N +A+ FW  V+EK++ RL  WK+A  SK GRLT+IQ VL  IP+YY+SLF+  
Subjt:  GLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYLSLFQAL

Query:  VAVCTSLEKIMRDFMWE
        + V   +EK+MRDF+WE
Subjt:  VAVCTSLEKIMRDFMWE

XP_028056784.1 uncharacterized protein LOC114260796 [Camellia sinensis]6.3e-2650.41Show/hide
Query:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL
        IF    GLK+N  KSS++GIN   S + R A+++GC + +FP  YLGLPLG + + +SFW LVL K++KRL  WK+A  SK GR TL+Q +L  +P+Y+L
Subjt:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL

Query:  SLFQALVAVCTSLEKIMRDFMWE
        SLF+  V++   +EK+MRDF+WE
Subjt:  SLFQALVAVCTSLEKIMRDFMWE

TrEMBL top hitse value%identityAlignment
A0A2P6QQZ3 Putative RNA-directed DNA polymerase2.6e-2554.92Show/hide
Query:  FRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLS
        F  + GLKIN+ K S++GIN E+ +L R A   GCE+G +P  YLGLPLG N K  SFW  V+EK++K L  WKKAF S+ GRLTLIQ VLS +P YYLS
Subjt:  FRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLS

Query:  LFQALVAVCTSLEKIMRDFMWE
        LFQ  V V   LE +++ F W+
Subjt:  LFQALVAVCTSLEKIMRDFMWE

A0A540M4H0 zf-RVT domain-containing protein1.2e-2556.41Show/hide
Query:  GLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLSLFQAL
        GLKIN+ K  + GIN +  KL R A   GCEVG +P  YLGLPLG   +AL FW  V+EKM+KRL  WKKAF S+ GRLTLIQ VL  +P+YY+SLF+  
Subjt:  GLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAF-SKVGRLTLIQEVLSGIPLYYLSLFQAL

Query:  VAVCTSLEKIMRDFMWE
          V   LEK+M+ F+WE
Subjt:  VAVCTSLEKIMRDFMWE

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)1.5e-2554.47Show/hide
Query:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL
        +F    G+KIN+ KS ILGIN  +  L   A   GCEVG +P  YLGLPLG N +AL+FW  V+EK++KRL  WK+A  SK GRLTLIQ VLS IP YY+
Subjt:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL

Query:  SLFQALVAVCTSLEKIMRDFMWE
        SLF+  + V   +E++MR+F+WE
Subjt:  SLFQALVAVCTSLEKIMRDFMWE

M5WPQ5 Reverse transcriptase domain-containing protein1.5e-2554.47Show/hide
Query:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL
        +F    G+KIN+ KS ILGIN  +  L   A   GCEVG +P  YLGLPLG N +AL+FW  V+EK++KRL  WK+A  SK GRLTLIQ VLS IP YY+
Subjt:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL

Query:  SLFQALVAVCTSLEKIMRDFMWE
        SLF+  + V   +E++MR+F+WE
Subjt:  SLFQALVAVCTSLEKIMRDFMWE

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)1.5e-2554.47Show/hide
Query:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL
        +F    G+KIN+ KS ILGIN  +  L   A   GCEVG +P  YLGLPLG N +AL+FW  V+EK++KRL  WK+A  SK GRLTLIQ VLS IP YY+
Subjt:  IFRSYLGLKINRGKSSILGINCESSKLLR-ASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKA-FSKVGRLTLIQEVLSGIPLYYL

Query:  SLFQALVAVCTSLEKIMRDFMWE
        SLF+  + V   +E++MR+F+WE
Subjt:  SLFQALVAVCTSLEKIMRDFMWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGAATATTCTGTTATCATTTTTCGAAGCTATCTGGGGCTAAAGATCAATCGAGGTAAGAGTTCAATTCTGGGCATCAACTGTGAATCCTCTAAGCTTCTTCGGGCTTC
ATTGGTGGGTTGCGAAGTCGGTAACTTCCCAACGTCCTATTTGGGTCTTCCTTTGGGGCATAATTCTAAGGCTCTTTCATTCTGGGCCCTAGTGTTGGAAAAGATGCAGA
AACGCCTATCCTTGTGGAAAAAAGCTTTTTCTAAAGTAGGGAGATTAACGCTCATTCAAGAAGTTCTAAGTGGGATTCCTTTGTACTATTTGTCCCTCTTTCAAGCCCTA
GTGGCTGTTTGTACAAGCTTGGAGAAAATTATGCGAGACTTTATGTGGGAG
mRNA sequenceShow/hide mRNA sequence
CTTGAATATTCTGTTATCATTTTTCGAAGCTATCTGGGGCTAAAGATCAATCGAGGTAAGAGTTCAATTCTGGGCATCAACTGTGAATCCTCTAAGCTTCTTCGGGCTTC
ATTGGTGGGTTGCGAAGTCGGTAACTTCCCAACGTCCTATTTGGGTCTTCCTTTGGGGCATAATTCTAAGGCTCTTTCATTCTGGGCCCTAGTGTTGGAAAAGATGCAGA
AACGCCTATCCTTGTGGAAAAAAGCTTTTTCTAAAGTAGGGAGATTAACGCTCATTCAAGAAGTTCTAAGTGGGATTCCTTTGTACTATTTGTCCCTCTTTCAAGCCCTA
GTGGCTGTTTGTACAAGCTTGGAGAAAATTATGCGAGACTTTATGTGGGAG
Protein sequenceShow/hide protein sequence
LEYSVIIFRSYLGLKINRGKSSILGINCESSKLLRASLVGCEVGNFPTSYLGLPLGHNSKALSFWALVLEKMQKRLSLWKKAFSKVGRLTLIQEVLSGIPLYYLSLFQAL
VAVCTSLEKIMRDFMWE