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MS009893 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009893
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold206:260319..260545
RNA-Seq ExpressionMS009893
SyntenyMS009893
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054311.1 golgin subfamily A member 6-like protein 22 isoform X2 [Cucumis melo var. makuwa]1.3e-0543.48Show/hide
Query:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKV
        LL    F  +R+DV   +P+PSMGF C S + LL+ P+      F ++ + K+PKK++ F WQVLLG+V
Subjt:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKV

XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]1.3e-0540.74Show/hide
Query:  VAHLLS---DVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL
        VA LLS      F   R+D+  W+P+PS GF   S ++LL+ P       F ++W   +PKK+  F+WQVLL +VN +D L
Subjt:  VAHLLS---DVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL

XP_022151711.1 uncharacterized protein LOC111019624 [Momordica charantia]1.9e-0643.21Show/hide
Query:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAA-----------------FALLWKVKIPKKIKVFVWQVLLG
        LL  V  S  R+DV  W P+P  GF+CSSF+ +LI P+ ++                 F  LWK+KIPKKIK F WQ L G
Subjt:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAA-----------------FALLWKVKIPKKIKVFVWQVLLG

XP_022968893.1 epimerase family protein SDR39U1 homolog, chloroplastic-like [Cucurbita maxima]4.8e-0542.25Show/hide
Query:  LSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL
        L +V      +++ FWSP+PS G  C SF+  LIL +  A     KV + KKI+ F WQ L G+VNT+ C+
Subjt:  LSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL

XP_038887741.1 epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Benincasa hispida]1.3e-0543.06Show/hide
Query:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL
        LL D+     R+++ FWSP+PS G +CS     LIL +      L KVKI K +  F WQ L G+VNT+ C+
Subjt:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL

TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025436.1e-0640.74Show/hide
Query:  VAHLLS---DVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL
        VA LLS      F   R+D+  W+P+PS GF   S ++LL+ P       F ++W   +PKK+  F+WQVLL +VN +D L
Subjt:  VAHLLS---DVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL

A0A5A7UL95 Golgin subfamily A member 6-like protein 22 isoform X26.1e-0643.48Show/hide
Query:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKV
        LL    F  +R+DV   +P+PSMGF C S + LL+ P+      F ++ + K+PKK++ F WQVLLG+V
Subjt:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPT---RAAFALLWKVKIPKKIKVFVWQVLLGKV

A0A5E4F2L4 zf-RVT domain-containing protein3.0e-0543.84Show/hide
Query:  LSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRA----AFALLWKVKIPKKIKVFVWQVLLGKVNTLD
        L  +     ++D   W    S  FTC SF + L    RA     F+L+WK K P K+KVFVW V LGKVNT D
Subjt:  LSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRA----AFALLWKVKIPKKIKVFVWQVLLGKVNTLD

A0A6J1DFI2 uncharacterized protein LOC1110196249.4e-0743.21Show/hide
Query:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAA-----------------FALLWKVKIPKKIKVFVWQVLLG
        LL  V  S  R+DV  W P+P  GF+CSSF+ +LI P+ ++                 F  LWK+KIPKKIK F WQ L G
Subjt:  LLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAA-----------------FALLWKVKIPKKIKVFVWQVLLG

A0A6J1HZE6 epimerase family protein SDR39U1 homolog, chloroplastic-like2.3e-0542.25Show/hide
Query:  LSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL
        L +V      +++ FWSP+PS G  C SF+  LIL +  A     KV + KKI+ F WQ L G+VNT+ C+
Subjt:  LSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGCCCATCTTCTATCTGACGTTTTTTTTTCTCGTGATAGGAAGGATGTCTGGTTCTGGTCCCCCAGTCCGTCTATGGGTTTTACTTGTAGCTCGTTTTATAACCTTTT
GATTCTTCCCACGCGGGCCGCTTTTGCCTTGCTTTGGAAAGTGAAAATTCCAAAGAAGATCAAGGTTTTTGTGTGGCAGGTCTTGCTTGGAAAAGTAAATACCCTGGATT
GTCTT
mRNA sequenceShow/hide mRNA sequence
GTTGCCCATCTTCTATCTGACGTTTTTTTTTCTCGTGATAGGAAGGATGTCTGGTTCTGGTCCCCCAGTCCGTCTATGGGTTTTACTTGTAGCTCGTTTTATAACCTTTT
GATTCTTCCCACGCGGGCCGCTTTTGCCTTGCTTTGGAAAGTGAAAATTCCAAAGAAGATCAAGGTTTTTGTGTGGCAGGTCTTGCTTGGAAAAGTAAATACCCTGGATT
GTCTT
Protein sequenceShow/hide protein sequence
VAHLLSDVFFSRDRKDVWFWSPSPSMGFTCSSFYNLLILPTRAAFALLWKVKIPKKIKVFVWQVLLGKVNTLDCL