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MS009899 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009899
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold206:402429..402671
RNA-Seq ExpressionMS009899
SyntenyMS009899
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-1047.3Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+S +P LY+LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-0944.59Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+  +P L++LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-0944.59Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+  +P L++LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1045.95Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+S +P LY+LS  K SS++++WN     WDL  RR L+E E   WA L N + A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]1.4e-1047.3Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+S +P LY+LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein6.8e-1147.3Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+S +P LY+LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein9.8e-1044.59Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+  +P L++LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein9.8e-1044.59Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+  +P L++LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.2e-1045.95Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+S +P LY+LS  K SS++++WN     WDL  RR L+E E   WA L N + A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein6.8e-1147.3Show/hide
Query:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
        ++NG S S WH +W  +SPL+S +P LY+LS  K SS++++WN     WDL  RR L+E E   WA L N L A
Subjt:  VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCAGGAATGGGGCATCAACATCTCTCTGGCATGATTATTGGCTTACTGATTCCCCATTGGCATCAACCTTTCCTTCCCTTTACTCCCTATCCCTCTGGAAAACTTCCTC
TGTCAAAGAGATTTGGAACCCAAATTTTAATTTTTGGGATTTGGGCTATAGGCGCTACCTAAAGGAAGAGGAAACTGCAAACTGGGCCACACTATTCAATCAACTAGAAG
CCATCCTCCTCCTTGCAGGTGAG
mRNA sequenceShow/hide mRNA sequence
GTCAGGAATGGGGCATCAACATCTCTCTGGCATGATTATTGGCTTACTGATTCCCCATTGGCATCAACCTTTCCTTCCCTTTACTCCCTATCCCTCTGGAAAACTTCCTC
TGTCAAAGAGATTTGGAACCCAAATTTTAATTTTTGGGATTTGGGCTATAGGCGCTACCTAAAGGAAGAGGAAACTGCAAACTGGGCCACACTATTCAATCAACTAGAAG
CCATCCTCCTCCTTGCAGGTGAG
Protein sequenceShow/hide protein sequence
VRNGASTSLWHDYWLTDSPLASTFPSLYSLSLWKTSSVKEIWNPNFNFWDLGYRRYLKEEETANWATLFNQLEAILLLAGE