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MS009903 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009903
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold206:520537..520803
RNA-Seq ExpressionMS009903
SyntenyMS009903
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019160442.1 PREDICTED: uncharacterized protein LOC109157011 [Ipomoea nil]7.1e-0845.68Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF
        +L+F KA+  E +++KK L  YEK SGQVVNF+KS +CF+ N     R+ + S   V   NN G YL LPS   R K   F
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF

XP_019168926.1 PREDICTED: uncharacterized protein LOC109164834 [Ipomoea nil]3.2e-0841.98Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF
        +L+F KA   E  ++K  LN YE  SGQ VNF+KS + F+PN     ++ + ++ NV +VNNLG YL LP    R + + F
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF

XP_022143493.1 uncharacterized protein LOC111013370 [Momordica charantia]1.4e-0841.98Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF
        +LIF +A+ ++   +K LL+VY   S Q +NF KSA+ F+PN++  ++ +L S+ +V  VN+ G Y  LPS+F RRK  D+
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.8e-1145.57Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKND
        +LIF+++   EC  +++LL+ Y +ASGQ +NF KSA+ F+PN++  ++ YLQ I NV+ V++ G YL LPS F RR+ +
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKND

XP_030487384.1 uncharacterized protein LOC115704310 [Cannabis sativa]1.9e-0843.21Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF
        +L+F++A   EC   K+LL  Y  ASGQ+VNF KS MCF  N++ + ++ L ++  V+ V+N G YL LPS   R K   F
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248748.8e-1245.57Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKND
        +LIF+++   EC  +++LL+ Y +ASGQ +NF KSA+ F+PN++  ++ YLQ I NV+ V++ G YL LPS F RR+ +
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKND

A0A803PM68 Uncharacterized protein4.1e-0944.44Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF
        +L+F++A   EC   ++LL  Y  ASGQVVNF KS MCF   ++D  +S L ++  V+ V+N G YL LPS   R K   F
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF

A0A803PYI0 Uncharacterized protein3.1e-0943.04Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKND
        +L+F+ AD   C   +++L  Y  ASGQ+VN+ KS  CF  N++D  RS L  +  VR V+N G YL LPS+  R K +
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKND

A0A803Q154 Uncharacterized protein2.2e-1049.38Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF
        +L+F  A  VEC   K LL+ Y  ASGQ VNF KS MCF   ++ S RS L ++ +V+ VNN G YL LPS F R K + F
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF

A0A803QSS9 Uncharacterized protein2.4e-0949.38Show/hide
Query:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF
        +L+F +A+  ECS  K+LLN Y  ASGQ+V F KS MCF   I+ S RS L ++  VR V+N G YL LPS   R K   F
Subjt:  NLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCTTAGTAAGGCAAGGAGACCCAACCTAATCTTTGTAAAGGCAGATGCAGTTGAGTGTTCCATGATGAAAAAGTTGCTTAATGTGTATGAGAAAGCATCAGGTCAAGT
GGTTAACTTTGATAAATCAGCCATGTGTTTCGCTCCGAACATAAATGATAGCAAAAGATCCTATTTGCAATCCATTCCAAACGTCCGATCAGTGAACAACTTAGGTATTT
ACCTAAGCCTCCCCTCTGCCTTTTTAAGAAGGAAGAATGATGATTTT
mRNA sequenceShow/hide mRNA sequence
GTTCTTAGTAAGGCAAGGAGACCCAACCTAATCTTTGTAAAGGCAGATGCAGTTGAGTGTTCCATGATGAAAAAGTTGCTTAATGTGTATGAGAAAGCATCAGGTCAAGT
GGTTAACTTTGATAAATCAGCCATGTGTTTCGCTCCGAACATAAATGATAGCAAAAGATCCTATTTGCAATCCATTCCAAACGTCCGATCAGTGAACAACTTAGGTATTT
ACCTAAGCCTCCCCTCTGCCTTTTTAAGAAGGAAGAATGATGATTTT
Protein sequenceShow/hide protein sequence
VLSKARRPNLIFVKADAVECSMMKKLLNVYEKASGQVVNFDKSAMCFAPNINDSKRSYLQSIPNVRSVNNLGIYLSLPSAFLRRKNDDF