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MS009904 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009904
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold206:521010..521222
RNA-Seq ExpressionMS009904
SyntenyMS009904
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012853795.1 PREDICTED: uncharacterized protein LOC105973319 [Erythranthe guttata]2.6e-1362.86Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGH
        N+ +IVLIPK +N R+VSDFR ISL NV YKI +K++ NRL KILND+IS TQ AF+P R I DN + GH
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGH

XP_030923330.1 uncharacterized protein LOC115950239 [Quercus lobata]1.5e-1360.56Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  NIVLIPKV+N  ++S+FR ISL NV YKI++KVLANRL ++L  +IS TQ AF+PGR I DN++V +E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

XP_030933459.1 uncharacterized protein LOC115959256 [Quercus lobata]1.5e-1359.15Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  NIVLIPK++N  ++S+FRLISL NV YKI++KVLANRL ++L  +IS TQ  F+PGR I DN++V +E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

XP_030940268.1 uncharacterized protein LOC115965235 [Quercus lobata]9.1e-1462.69Show/hide
Query:  IVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        + LIPK+++ R+VSDFR ISL NV YK++AKVLANRL K L ++IS+TQ AF+PGR I DNI++ HE
Subjt:  IVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

XP_035551144.1 uncharacterized protein LOC118349708 [Juglans regia]1.5e-1361.97Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  ++VLIPK++  + V DFR ISL NV+YKI+AK LANRL K+LN+VIS  Q AFIPGR I DNII  +E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

TrEMBL top hitse value%identityAlignment
A0A2N9FHA2 Uncharacterized protein1.3e-1364.79Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  NI LIPK +N     DFR ISL NV YKIVAKVLANRL K+L  VISKTQ AF+PGR I+DNI++  E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

A0A2N9GN35 Uncharacterized protein7.5e-1461.97Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  ++ LIPKV+NL  V DFR ISL NV YKI+AKVLANRL KIL  +IS++Q AF+PGR I+DNI++  E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

A0A2N9GXF5 Uncharacterized protein7.5e-1461.97Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  ++ LIPKV+NL  V DFR ISL NV YKI+AKVLANRL KIL  +IS++Q AF+PGR I+DNI++  E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

A0A2N9I8Z6 Reverse transcriptase domain-containing protein7.5e-1461.97Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  ++ LIPKV+NL  V DFR ISL NV YKI+AKVLANRL KIL  +IS++Q AF+PGR I+DNI++  E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

A0A6P9EU11 uncharacterized protein LOC1183497087.5e-1461.97Show/hide
Query:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE
        N  ++VLIPK++  + V DFR ISL NV+YKI+AK LANRL K+LN+VIS  Q AFIPGR I DNII  +E
Subjt:  NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein2.5e-0643.55Show/hide
Query:  LIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIV
        L+PK  +LR + ++R +SL +  YKIVAK ++ RL  +L +VI   Q   +PGRTI DN+ +
Subjt:  LIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGTTATAAACATTGTCCTAATTCCCAAAGTTGAAAATCTGAGGCAAGTATCTGATTTCCGTCTTATTAGTCTCTACAATGTATACTACAAAATTGTGGCGAAAGTGTT
GGCGAATCGTTTGACGAAAATTCTAAATGATGTTATATCGAAAACTCAATATGCTTTTATCCCGGGAAGGACAATTAATGACAACATAATTGTTGGGCATGAA
mRNA sequenceShow/hide mRNA sequence
AATGTTATAAACATTGTCCTAATTCCCAAAGTTGAAAATCTGAGGCAAGTATCTGATTTCCGTCTTATTAGTCTCTACAATGTATACTACAAAATTGTGGCGAAAGTGTT
GGCGAATCGTTTGACGAAAATTCTAAATGATGTTATATCGAAAACTCAATATGCTTTTATCCCGGGAAGGACAATTAATGACAACATAATTGTTGGGCATGAA
Protein sequenceShow/hide protein sequence
NVINIVLIPKVENLRQVSDFRLISLYNVYYKIVAKVLANRLTKILNDVISKTQYAFIPGRTINDNIIVGHE