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MS009907 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009907
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold206:573944..574336
RNA-Seq ExpressionMS009907
SyntenyMS009907
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG66222.1 hypothetical protein EZV62_007497 [Acer yangbiense]6.3e-2153.85Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRG-GVEVWCSVQYERLPDFCFNCCVIGHSCGEC-EKP
        W+QIHNVP  CM+K +   LG  VGEV+EVD G   S+   FLR+R+ L+I KPLRR ++I   G GVE    ++YERLPDFCF C +IGHS  +C EK 
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRG-GVEVWCSVQYERLPDFCFNCCVIGHSCGEC-EKP

Query:  PVQG
         V G
Subjt:  PVQG

XP_015382889.1 uncharacterized protein LOC102626150 [Citrus sinensis]2.7e-1950.52Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQ--RGGVEVWCSVQYERLPDFCFNCCVIGHSCGEC
        W+QIH+VP  CMSK MA +LGA +G+V EVD       +GPFLR+RI +DI+KPL++ ++++Q      ++   V YERLPDFCF C  IGH   EC
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQ--RGGVEVWCSVQYERLPDFCFNCCVIGHSCGEC

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.6e-2752.58Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK
        W+QIHN+PF C+S  MA  LGA +G+V E++    D W GPF+R+R+ +D++KPLRRG+K+K   G ++WC ++YE+LPDFC+ C  IGHS  ECE+
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]1.0e-2351.55Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK
        W+QIH + F CM+K MA  LGA +GEV EVD   +  W+ PFL +R+ +++ KPLRRG+K+K   G ++WC ++YERLPDFC+ C  +GHS  E EK
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK

XP_042954587.1 uncharacterized protein LOC122290997 [Carya illinoinensis]1.2e-1947.06Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV
        WLQ+H++PF  M+K M  KLG +VG+V+ VD    D   G +LR+++ LDITKPL RG K+   GG   W   +YERLP FCF C  I H    C + P+
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV

Query:  QG
         G
Subjt:  QG

TrEMBL top hitse value%identityAlignment
A0A2N9IQU0 Uncharacterized protein6.4e-1941.41Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECE----
        W+QI N+P  CM K++A  LG S+GEVI       DS  G  +R+R+ +DITKPL RG +I    G E W S QYERLP+FC+ C +  H   +CE    
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECE----

Query:  -------KPPVQGL---VEVEKIWRVVH
               K P  GL      +++ R+VH
Subjt:  -------KPPVQGL---VEVEKIWRVVH

A0A5C7IBW4 CCHC-type domain-containing protein3.1e-2153.85Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRG-GVEVWCSVQYERLPDFCFNCCVIGHSCGEC-EKP
        W+QIHNVP  CM+K +   LG  VGEV+EVD G   S+   FLR+R+ L+I KPLRR ++I   G GVE    ++YERLPDFCF C +IGHS  +C EK 
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRG-GVEVWCSVQYERLPDFCFNCCVIGHSCGEC-EKP

Query:  PVQG
         V G
Subjt:  PVQG

A0A6J1D765 uncharacterized protein LOC1110179027.5e-2852.58Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK
        W+QIHN+PF C+S  MA  LGA +G+V E++    D W GPF+R+R+ +D++KPLRRG+K+K   G ++WC ++YE+LPDFC+ C  IGHS  ECE+
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK

A0A6J1DU55 uncharacterized protein LOC1110231351.7e-1946.39Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGV-EVWCSVQYERLPDFCFNCCVIGHSCGECE
        W+ + ++P + ++K MA++LG ++G  ++VDC       G  LRIR+ +DITKPLRRG+KI   G +   W  +QYERLPDFC+ C VIGHS  +C+
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGV-EVWCSVQYERLPDFCFNCCVIGHSCGECE

A0A6J1DVS4 uncharacterized protein LOC1110235555.1e-2451.55Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK
        W+QIH + F CM+K MA  LGA +GEV EVD   +  W+ PFL +R+ +++ KPLRRG+K+K   G ++WC ++YERLPDFC+ C  +GHS  E EK
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEK

SwissProt top hitse value%identityAlignment
O04244 Uncharacterized protein At4g020006.4e-0827.48Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV
        W+Q+  +P   + +  AL++   +G+++ +D   + +    ++R+RI   IT  LR   +I    G     S QYERL   C +C  + H    C   P 
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV

Query:  QGLVEVEKIWRVVHADAWRNLGFADRSRDVN
        +   ++E + RV ++ A RN+      RD N
Subjt:  QGLVEVEKIWRVVHADAWRNLGFADRSRDVN

Arabidopsis top hitse value%identityAlignment
AT2G13450.1 unknown protein4.1e-1028.24Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV
        W+Q+  +P   + +  AL++   +GE+I +D   + +    ++R+RI   IT  LR  ++I    G     S QYERL   C +C  + H    C     
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV

Query:  QGLVEVEKIWRVVHADAWRNLGFADRSRDVN
            ++E + RV +  A RN+      RD N
Subjt:  QGLVEVEKIWRVVHADAWRNLGFADRSRDVN

AT2G17920.1 nucleic acid binding;zinc ion binding1.8e-1028.7Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV
        W+Q+  +PF  +S+  AL++   +G +I +D     S    ++R+R+ + IT  LR   +I    G       QYERL   C NC    H+   C   P 
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV

Query:  QGLVEVEK
          +++ E+
Subjt:  QGLVEVEK

AT3G31430.1 unknown protein4.8e-1131.58Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGEC
        W+QI  +PF  +++ +   +G ++G+V++ D  V       F R+ +  DIT PLR     +   GV      +YERL  FC  C ++ H  G C
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGEC

AT4G02000.1 unknown protein4.5e-0927.48Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV
        W+Q+  +P   + +  AL++   +G+++ +D   + +    ++R+RI   IT  LR   +I    G     S QYERL   C +C  + H    C   P 
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPV

Query:  QGLVEVEKIWRVVHADAWRNLGFADRSRDVN
        +   ++E + RV ++ A RN+      RD N
Subjt:  QGLVEVEKIWRVVHADAWRNLGFADRSRDVN

AT5G25200.1 unknown protein5.0e-0830.53Show/hide
Query:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGEC
        W+QI  +P   +S+   L++   +GE+I +D     S    F+R+R+   IT  LR   +I    G       QYERL   C +C    H+   C
Subjt:  WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGEC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGCTACAAATACACAATGTTCCTTTTAATTGTATGTCGAAAGCTATGGCCCTGAAATTGGGAGCATCTGTGGGCGAGGTGATTGAGGTTGATTGTGGAGTCAATGACAG
TTGGATGGGGCCTTTTCTTCGTATCCGAATTGGATTGGACATCACGAAGCCCCTCCGGCGTGGTGTCAAAATCAAGCAGAGAGGTGGGGTAGAGGTTTGGTGCTCAGTTC
AGTATGAGAGGCTTCCGGATTTTTGTTTTAATTGTTGTGTGATTGGTCACTCGTGCGGAGAGTGTGAAAAACCTCCAGTACAGGGGTTGGTGGAGGTTGAGAAAATATGG
AGGGTGGTGCATGCGGATGCATGGAGAAACCTGGGTTTTGCGGACCGGTCGAGGGATGTGAAC
mRNA sequenceShow/hide mRNA sequence
TGGCTACAAATACACAATGTTCCTTTTAATTGTATGTCGAAAGCTATGGCCCTGAAATTGGGAGCATCTGTGGGCGAGGTGATTGAGGTTGATTGTGGAGTCAATGACAG
TTGGATGGGGCCTTTTCTTCGTATCCGAATTGGATTGGACATCACGAAGCCCCTCCGGCGTGGTGTCAAAATCAAGCAGAGAGGTGGGGTAGAGGTTTGGTGCTCAGTTC
AGTATGAGAGGCTTCCGGATTTTTGTTTTAATTGTTGTGTGATTGGTCACTCGTGCGGAGAGTGTGAAAAACCTCCAGTACAGGGGTTGGTGGAGGTTGAGAAAATATGG
AGGGTGGTGCATGCGGATGCATGGAGAAACCTGGGTTTTGCGGACCGGTCGAGGGATGTGAAC
Protein sequenceShow/hide protein sequence
WLQIHNVPFNCMSKAMALKLGASVGEVIEVDCGVNDSWMGPFLRIRIGLDITKPLRRGVKIKQRGGVEVWCSVQYERLPDFCFNCCVIGHSCGECEKPPVQGLVEVEKIW
RVVHADAWRNLGFADRSRDVN