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MS009918 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009918
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold707:139955..140367
RNA-Seq ExpressionMS009918
SyntenyMS009918
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5473466.1 hypothetical protein F2P56_010075, partial [Juglans regia]9.0e-1039.68Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRA-----QSNKGGSHLIHWSKVQLPLDWVGLGSRNLA-KEYFPPWKWLWRF
        KRL  WK  + SK+ + TLI++TL+NLP   L LF L   V   +EK +RA        +   HL++W +V  P    GLG RNL+        KWLWR+
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRA-----QSNKGGSHLIHWSKVQLPLDWVGLGSRNLA-KEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSG
         +K+NSLWR+    K  S     W G
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSG

KAG2674229.1 hypothetical protein I3760_13G124800 [Carya illinoinensis]2.6e-0938.4Show/hide
Query:  RLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNLAK-EYFPPWKWLWRFH
        +L  WK  + SK  + T I++TL+NLP   L LF + + V   +EK++R        ++   HLI W KV  PL + GLG RNL         KWLWR+H
Subjt:  RLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNLAK-EYFPPWKWLWRFH

Query:  IKKNSLWRKTFVAKSSSSNNHLWSG
        ++ ++LWR T  AK  S    +W G
Subjt:  IKKNSLWRKTFVAKSSSSNNHLWSG

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-1140.71Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF
        K+L NWK +H SK  + TLI++TL++LP+  L +F   S   K IEK +R    KG     GSHLI+WS V  P +  GLG SR          KWLWR+
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI
        + + NSLWR+    K    +      + S SSS  PW  I
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1140.71Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF
        K+L NWK +H SK  + TLI++TL++LP+  L +F  +S   K IEK +R    KG     GSHLI+WS V  P +  GLG SR          KWLWR+
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI
        + + NSLWR+    K    +      + S SSS  PW  I
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI

XP_030497604.1 uncharacterized protein LOC115713262 [Cannabis sativa]4.5e-0937.06Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNL-AKEYFPPWKWLWRF
        KRL   K S  S+  + TLIQ+ L++ P+  L LF     VTKA+EK  R        + GG HL+ W +V  P +  GLG  NL         KWLWRF
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNL-AKEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVICKL
         ++ NSLW K  +++   ++N   +   SL S   PW  I  L
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVICKL

TrEMBL top hitse value%identityAlignment
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein4.8e-0935.17Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNLA-KEYFPPWKWLWRF
        K+L+ WK S  SK  + TL++A+L++LP   L  F     V K IEK +R        +K  +HLI+W+    P +  GLG   L         KWLWR+
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNLA-KEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVICKLKE
        H + NSLW+K   AK + ++          SS+  PW+ I K K+
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVICKLKE

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein1.0e-1140.71Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF
        K+L NWK +H SK  + TLI++TL++LP+  L +F   S   K IEK +R    KG     GSHLI+WS V  P +  GLG SR          KWLWR+
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI
        + + NSLWR+    K    +      + S SSS  PW  I
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein7.9e-1240.71Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF
        K+L NWK +H SK  + TLI++TL++LP+  L +F  +S   K IEK +R    KG     GSHLI+WS V  P +  GLG SR          KWLWR+
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI
        + + NSLWR+    K    +      + S SSS  PW  I
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI

A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein2.8e-0937.86Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF
        K+L NWK +H SK  + TLI++TL++LP+  L +F   S   K IEK +R    KG     GSHLI+W+ V  P +   LG S+          KWLWR+
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYRAQSNKG-----GSHLIHWSKVQLPLDWVGLG-SRNLAKEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI
        + + NSLWR+    K    +      + S SS   PW  I
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSRSLSSSYVPWHVI

A0A803P465 Uncharacterized protein8.8e-1138.19Show/hide
Query:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNL-AKEYFPPWKWLWRF
        KRL  WK +  SK  + TLIQ+ L++LP+  L LF     VTKA+EK  R        + GG HL+ W +V  P    GLG   L  +      KWLWRF
Subjt:  KRLHNWKNSH-SKDHQATLIQATLTNLPV-SLPLFNLTSKVTKAIEKSYR-----AQSNKGGSHLIHWSKVQLPLDWVGLGSRNL-AKEYFPPWKWLWRF

Query:  HIKKNSLWRKTFVAKSSSSNNHLWSGSR-SLSSSYVPWHVICKL
         +++NSLW +  V++   ++N LW   + S  S   PW  I  L
Subjt:  HIKKNSLWRKTFVAKSSSSNNHLWSGSR-SLSSSYVPWHVICKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAGGCTTCACAACTGGAAGAACTCCCACTCCAAAGATCACCAAGCAACTCTAATTCAAGCCACTCTTACAAATTTGCCCGTATCTTTACCTCTTTTCAATTTGACTTC
CAAGGTCACTAAAGCTATTGAGAAATCATACAGAGCTCAAAGCAATAAAGGAGGTAGCCACCTTATTCATTGGTCAAAGGTTCAACTTCCCCTTGATTGGGTAGGGCTTG
GCAGTAGAAACCTAGCAAAGGAATACTTCCCTCCTTGGAAATGGCTTTGGAGATTTCATATCAAGAAAAATTCTCTTTGGAGAAAAACTTTTGTGGCTAAGTCAAGCTCG
TCTAACAACCATTTATGGTCAGGTTCTCGTTCTCTTTCCTCTTCTTATGTGCCGTGGCATGTCATCTGCAAGCTAAAGGAG
mRNA sequenceShow/hide mRNA sequence
AAGAGGCTTCACAACTGGAAGAACTCCCACTCCAAAGATCACCAAGCAACTCTAATTCAAGCCACTCTTACAAATTTGCCCGTATCTTTACCTCTTTTCAATTTGACTTC
CAAGGTCACTAAAGCTATTGAGAAATCATACAGAGCTCAAAGCAATAAAGGAGGTAGCCACCTTATTCATTGGTCAAAGGTTCAACTTCCCCTTGATTGGGTAGGGCTTG
GCAGTAGAAACCTAGCAAAGGAATACTTCCCTCCTTGGAAATGGCTTTGGAGATTTCATATCAAGAAAAATTCTCTTTGGAGAAAAACTTTTGTGGCTAAGTCAAGCTCG
TCTAACAACCATTTATGGTCAGGTTCTCGTTCTCTTTCCTCTTCTTATGTGCCGTGGCATGTCATCTGCAAGCTAAAGGAG
Protein sequenceShow/hide protein sequence
KRLHNWKNSHSKDHQATLIQATLTNLPVSLPLFNLTSKVTKAIEKSYRAQSNKGGSHLIHWSKVQLPLDWVGLGSRNLAKEYFPPWKWLWRFHIKKNSLWRKTFVAKSSS
SNNHLWSGSRSLSSSYVPWHVICKLKE